Structural and Biophysical Analysis of the Soluble DHH/DHHA1-Type Phosphodiesterase TM1595 from Thermotoga maritima.

Drexler DJ, Müller M, Rojas-Cordova CA, Bandera AM, Witte G, Structure 25(12):1887-1897.e4 (2017) Europe PMC

SASDCB7 – Streptococcus pneumoniae phosphodiesterase Pde2

DHH subfamily 1 protein
MWexperimental 57 kDa
MWexpected 70 kDa
VPorod 87 nm3
log I(s) 2.12×104 2.12×103 2.12×102 2.12×101
DHH subfamily 1 protein small angle scattering data  s, nm-1
ln I(s)
DHH subfamily 1 protein Guinier plot ln 2.12×104 Rg: 2.7 nm 0 (2.7 nm)-2 s2
(sRg)2I(s)/I(0)
DHH subfamily 1 protein Kratky plot 1.104 0 3 sRg
p(r)
DHH subfamily 1 protein pair distance distribution function Rg: 2.7 nm 0 Dmax: 7.7 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of Streptococcus pneumoniae phosphodiesterase Pde2 in 20mM Tris, 200 mM NaCl, 5%(v/v) glycerol, pH 7.5, were collected on the EMBL-P12 beam line at the PETRA III storage ring (Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.123987 nm (I(s) vs s, where s = 4π sin θ/λ and 2θ is the scattering angle). One solute concentration of 7.00 mg/ml was measured at 20°C. 39 successive 0.045 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for protein concentration.

Storage temperature = UNKNOWN

DHH subfamily 1 protein (SpnPde2)
Mol. type   Protein
Organism   Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Olig. state   Dimer
Mon. MW   35.1 kDa
 
UniProt   A0A0H2ZNP2
Sequence   FASTA