Curated repository for small angle scattering data and models


SASBDB currently contains:


4445

experimental data sets

5789

models
637 experimental data sets on hold
706 models on hold

Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm.
SASBDB is a fully searchable curated repository of freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.

Recent depositions:

SASDUU5 – Human Double-stranded RNA-binding protein Staufen homolog 1 with truncated RNA-binding domain 2 bound to 3'UTR fragment of ADP-ribosylation factor 1

Double-stranded RNA-binding protein Staufen homolog 1 (Δ1-177)3'UTR fragment of ADP-ribosylation factor 1 experimental SAS data
CORAL model
Sample: Double-stranded RNA-binding protein Staufen homolog 1 (Δ1-177) dimer, 89 kDa Homo sapiens protein
3'UTR fragment of ADP-ribosylation factor 1 monomer, 14 kDa Homo sapiens RNA
Buffer: 50 mM TRIS, 300 mM NaCl, 3.8 mM β-mercaptoethanol, pH: 7
Experiment: SAXS data collected at Rigaku BioSAXS-1000, CEITEC on 2020 May 4
A Simple Protocol for Visualization of RNA-Protein Complexes by Atomic Force Microscopy. Curr Protoc 5(1):e70084 (2025)
Tripepi A, Shakoor H, Klapetek P
RgGuinier 4.9 nm
Dmax 13.4 nm
VolumePorod 129 nm3

Mannitou IgM Fab Monomer
IgM Mannitou Fab Heavy ChainIgM Mannitou Fab Light Chain experimental SAS data
Small-angle X-ray scattering of engineered antigen-binding fragments: the case of glycosylated Fab from the Mannitou IgM antibody. Acta Crystallogr F Struct Biol Commun 2025 Jan 1;
Acta Crystallogr F Struct Biol Commun (2025 Jan 1)
Mouse Fc fragment of IgG binding protein
Fc fragment of IgG binding protein experimental SAS data
The structure of FCGBP is formed as a disulfide-mediated homodimer between its C-terminal domains. FEBS J 2025 Jan 3;
FEBS J (2025 Jan 3)
Serine hydrolase FphH with short chain esterase activity (Apo FphH)
Alpha/beta fold hydrolase experimental SAS data
Similar but Distinct—Biochemical Characterization of the Staphylococcus aureus Serine Hydrolases FphH  and FphI Proteins: Structure, Function, and Bioinformatics 2024 Dec 26
Proteins: Structure, Function, and Bioinformatics (2024 Dec 26)
C-terminal truncation mutant of N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF
N(5)-hydroxyornithine:cis-anhydromevalonyl coenzyme A-N(5)-transacylase sidF (Δ444-462) experimental SAS data
SidF, a dual substrate N5-acetyl-N5-hydroxy-L-ornithine transacetylase involved in Aspergillus fumigatus siderophore biosynthesis Journal of Structural Biology: X 2025 Jun 11:100119
Journal of Structural Biology: X 11:100119 (2025 Jun)
2-nitroimidazole nitrohydrolase
2-nitroimidazole nitrohydrolase (T2I, G14D, K73R) experimental SAS data
Structural insights into the enzymatic breakdown of azomycin-derived antibiotics by 2-nitroimdazole hydrolase (NnhA). Commun Biol 2024 Dec 19;7(1):1676
Commun Biol 7(1):1676 (2024 Dec 19)

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To cite SASBDB refer to: Kikhney AG, Borges CR, Molodenskiy DS, Jeffries CM, Svergun DI (2020) SASBDB: Towards an automatically curated and validated repository for biological scattering data. Protein Science 29(1); 66-75.