Browse by MODEL: Ab initio only

SASDX39 – Group IIC Intron Domain 1

Group IIC Intron Domain 1 experimental SAS data
DAMMIF model
Sample: Group IIC Intron Domain 1 monomer, 89 kDa Oceanobacillus iheyensis RNA
Buffer: 10 mM MgCl2, 5 mM Na-MES, pH: 6.5
Experiment: SAXS data collected at BM29, ESRF on 2021 Jul 7
Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy. Nat Commun 16(1):10195 (2025)
Jadhav S, Maiorca M, Manigrasso J, Saha S, Rakitch A, Muscat S, Mulvaney T, De Vivo M, Topf M, Marcia M
RgGuinier 3.8 nm
Dmax 13.0 nm
VolumePorod 188 nm3

SASDX49 – Group IIC intron Domain 1, 2 & 3

Group IIC Intron Domain 1, 2 & 3 experimental SAS data
DAMMIF model
Sample: Group IIC Intron Domain 1, 2 & 3 monomer, 103 kDa Oceanobacillus iheyensis RNA
Buffer: 10 mM MgCl2, 5 mM Na-MES, pH: 6.5
Experiment: SAXS data collected at BM29, ESRF on 2021 Sep 2
Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy. Nat Commun 16(1):10195 (2025)
Jadhav S, Maiorca M, Manigrasso J, Saha S, Rakitch A, Muscat S, Mulvaney T, De Vivo M, Topf M, Marcia M
RgGuinier 3.6 nm
Dmax 12.0 nm
VolumePorod 195 nm3

SASDX59 – Group IIC intron Domain 1 & 2

Group IIC Intron Domain 1 & 2 experimental SAS data
DAMMIF model
Sample: Group IIC Intron Domain 1 & 2 monomer, 96 kDa Oceanobacillus iheyensis RNA
Buffer: 10 mM MgCl2, 5 mM Na-MES, pH: 6.5
Experiment: SAXS data collected at BM29, ESRF on 2021 Sep 2
Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy. Nat Commun 16(1):10195 (2025)
Jadhav S, Maiorca M, Manigrasso J, Saha S, Rakitch A, Muscat S, Mulvaney T, De Vivo M, Topf M, Marcia M
RgGuinier 3.6 nm
Dmax 11.0 nm
VolumePorod 179 nm3

SASDX69 – Group IIC intron Domain 1, 2. 3 & 4

Group IIC intron Domain 1, 2, 3 & 4 experimental SAS data
DAMMIF model
Sample: Group IIC intron Domain 1, 2, 3 & 4 monomer, 125 kDa Oceanobacillus iheyensis RNA
Buffer: 10 mM MgCl2, 5 mM Na-MES, pH: 6.5
Experiment: SAXS data collected at BM29, ESRF on 2021 Sep 2
Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy. Nat Commun 16(1):10195 (2025)
Jadhav S, Maiorca M, Manigrasso J, Saha S, Rakitch A, Muscat S, Mulvaney T, De Vivo M, Topf M, Marcia M
RgGuinier 4.2 nm
Dmax 12.6 nm
VolumePorod 247 nm3

SASDWC7 – SEC-SAXS data of wildtype human apo estrogen receptor alpha ligand binding domain (LBD) at pH 7.5

Estrogen receptor alpha experimental SAS data
DAMMIF model
Sample: Estrogen receptor alpha dimer, 55 kDa Homo sapiens protein
Buffer: 20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5% glycerol, 2 mM TCEP, pH: 7.5
Experiment: SAXS data collected at BioSAXS, Australian Synchrotron on 2024 Nov 9
A ternary switch model governing ERα ligand binding domain conformation. Nat Commun 16(1):10363 (2025)
McDougal DP, Pederick JL, Novick SJ, Jovcevski B, Warrender AK, Pascal BD, Griffin PR, Bruning JB
RgGuinier 2.4 nm
Dmax 7.4 nm
VolumePorod 74 nm3

SASDWD7 – SEC-SAXS data of wildtype Melanotaenia fluviatilis apo estrogen receptor alpha ligand binding domain (LBD) at pH 7.5

Estrogen receptor alpha experimental SAS data
DAMMIF model
Sample: Estrogen receptor alpha dimer, 57 kDa Melanotaenia fluviatilis protein
Buffer: 20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5% glycerol, 2 mM TCEP, pH: 7.5
Experiment: SAXS data collected at BioSAXS, Australian Synchrotron on 2024 Nov 9
A ternary switch model governing ERα ligand binding domain conformation. Nat Commun 16(1):10363 (2025)
McDougal DP, Pederick JL, Novick SJ, Jovcevski B, Warrender AK, Pascal BD, Griffin PR, Bruning JB
RgGuinier 2.5 nm
Dmax 9.2 nm
VolumePorod 72 nm3

SASDMU5 – Kinesin superfamily protein 3 B/B and kinesin associated protein 3 (KAP)

Kinesin-associated protein 3Kinesin-like protein KIF3B experimental SAS data
DAMMIF model
Sample: Kinesin-associated protein 3 monomer, 81 kDa Mus musculus protein
Kinesin-like protein KIF3B dimer, 64 kDa Mus musculus protein
Buffer: 20 mM Tris-HCl, 200 mM NaCl, 1 mM DTT, pH: 8
Experiment: SAXS data collected at BL-10C, Photon Factory (PF), High Energy Accelerator Research Organization (KEK) on 2020 Feb 14
Kinesin protein 3 B/B and kinesin associated protein 3 (KAP)
Kento Yonezawa
RgGuinier 5.7 nm
Dmax 28.0 nm
VolumePorod 385 nm3

SASDYH2 – RnaseA at pH 7.4

Bovine Ribonuclease pancreatic experimental SAS data
DAMMIF model
Sample: Bovine Ribonuclease pancreatic monomer, 14 kDa Bos taurus protein
Buffer: 20 mM HEPES, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2025 Jul 9
RnaseA
Anthony Giannetti
RgGuinier 1.6 nm
Dmax 60.0 nm
VolumePorod 16 nm3

SASDYJ2 – Hen Egg White Lysozyme pH 7.4

Hen egg white lysozyme experimental SAS data
DAMMIF model
Sample: Hen egg white lysozyme monomer, 14 kDa Gallus gallus protein
Buffer: 20 mM HEPES, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2025 Jul 9
Lysozyme pH 7.4 with models
Anthony Giannetti
RgGuinier 1.6 nm
Dmax 59.0 nm
VolumePorod 23 nm3

SASDYK2 – Histatin 3 peptide

Histatin-3 experimental SAS data
DAMMIF model
Sample: Histatin-3 monomer, 4 kDa Homo sapiens protein
Buffer: 20 mM HEPES, 150 mM NaCl, pH: 7.4
Experiment: SAXS data collected at BL4-2, Stanford Synchrotron Radiation Lightsource (SSRL) on 2025 Jul 9
Histatin 3
Anthony Giannetti
RgGuinier 1.5 nm
Dmax 6.6 nm
VolumePorod 7 nm3