Modeling the ComD/ComE/comcde interaction network using small angle X-ray scattering.

Sanchez D, Boudes M, van Tilbeurgh H, Durand D, Quevillon-Cheruel S, FEBS J 282(8):1538-53 (2015) Europe PMC

SASDAA7 – Heterotetramer of histidine protein kinase and response regulator

Histidine protein kinase
Response regulator
MWexperimental 116 kDa
MWexpected 115 kDa
VPorod 175 nm3
log I(s) 7.46×10-2 7.46×10-3 7.46×10-4 7.46×10-5
Histidine protein kinase Response regulator small angle scattering data  s, nm-1
ln I(s)
Histidine protein kinase Response regulator Guinier plot ln 7.47×10-2 Rg: 4.0 nm 0 (4.0 nm)-2 s2
(sRg)2I(s)/I(0)
Histidine protein kinase Response regulator Kratky plot 1.104 0 3 sRg
p(r)
Histidine protein kinase Response regulator pair distance distribution function Rg: 4.1 nm 0 Dmax: 16 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Histidine protein kinase Response regulator BUNCH model

X-ray in house radiation scattering data from solutions of the two-componentsystem ComD-ComE in 20 mM Tris 200 mM NaCl, 5% (vol/vol) glycerol and 5 mM β-mercaptoethanol were collected on the Bruker Nanostar camera (Orsay, France) using a VANTEC detector (s = 4π sin θ/λ, where 2θ is the scattering angle). Different solute concentrations in the range 0.40-1.10 mg/ml were measured. 32 successive 1200 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The scattered intensities were displayed on an absolute scale (cm-1) using the scattering by water. The low angle data collected were merged with the highest concentration high angle data to yield the final composite scattering curve.

Use of SAXS to describe the interaction between ComD and ComE, the two-component system which regulates the competence in S. pneumoniae. The molecular weight is not estimated from I(0) due to the absence of tryptophan in ComE. It is obtained from the macromolecule volume by using the method developed by Craievich's team (the SAXS Mow program).

Histidine protein kinase (ComD)
Mol. type   Protein
Organism   Streptococcus pneumoniae
Olig. state   Dimer
Mon. MW   26.9 kDa
 
UniProt   Q8DMW4 (216-441)
Sequence   FASTA
 
Response regulator (ComE)
Mol. type   Protein
Organism   Streptococcus pneumoniae
Olig. state   Monomers
Mon. MW   30.7 kDa
 
UniProt   Q8DMW5 (1-250)
Sequence   FASTA