Conformational analysis of a genetically encoded FRET biosensor by SAXS.

Mertens HD, Piljić A, Schultz C, Svergun DI, Biophys J 102(12):2866-75 (2012) Europe PMC

SASDAE5 – CYNEX4

CYNEX4 FRET probe, (eYFP-AnnexinA4-eCFP)
MWI(0) 84 kDa
MWexpected 93 kDa
VPorod 135 nm3
log I(s) 8.69×101 8.69×100 8.69×10-1 8.69×10-2
CYNEX4 FRET probe, (eYFP-AnnexinA4-eCFP) small angle scattering data  s, nm-1
ln I(s)
CYNEX4 FRET probe, (eYFP-AnnexinA4-eCFP) Guinier plot ln 8.69×101 Rg: 3.7 nm 0 (3.7 nm)-2 s2
(sRg)2I(s)/I(0)
CYNEX4 FRET probe, (eYFP-AnnexinA4-eCFP) Kratky plot 1.104 0 3 sRg
p(r)
CYNEX4 FRET probe, (eYFP-AnnexinA4-eCFP) pair distance distribution function Rg: 3.8 nm 0 Dmax: 12.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
CYNEX4 FRET probe, (eYFP-AnnexinA4-eCFP) DAMMIF model

log I(s)
 s, nm-1
CYNEX4 FRET probe, (eYFP-AnnexinA4-eCFP) CORAL model

Synchrotron SAXS data from solutions of CYNEX4 in 50 mM HEPES 150 mM NaCl 1 mM EGTA, pH 7.5 were collected on the EMBL X33 beam line at the DORIS III, DESY storage ring (Hamburg, Germany) using a Pilatus 1M-W detector at a sample-detector distance of 2.7 m and at a wavelength of λ = 0.15 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 0.8 and 12.8 mg/ml were measured at 10°C. Eight successive 15 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.

PED: https://proteinensemble.org/PED00007

Tags: X33 PED
CYNEX4 FRET probe, (eYFP-AnnexinA4-eCFP) (CYNEX4)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   92.8 kDa
Sequence   FASTA
 
PED ID   PED00007