Highly selective tungstate transporter protein TupA from Desulfovibrio alaskensis G20.

Otrelo-Cardoso AR, Nair RR, Correia MAS, Cordeiro RSC, Panjkovich A, Svergun DI, Santos-Silva T, Rivas MG, Sci Rep 7(1):5798 (2017) Europe PMC

SASDBG9 – ABC transporter periplasmic substrate-binding protein TupA measured in the presence of tungstate

ABC transporter periplasmic substrate-binding protein
MWI(0) 29 kDa
MWexpected 30 kDa
VPorod 44 nm3
log I(s) 2.89×101 2.89×100 2.89×10-1 2.89×10-2
ABC transporter periplasmic substrate-binding protein small angle scattering data  s, nm-1
ln I(s)
ABC transporter periplasmic substrate-binding protein Guinier plot ln 2.89×101 Rg: 2.3 nm 0 (2.3 nm)-2 s2
(sRg)2I(s)/I(0)
ABC transporter periplasmic substrate-binding protein Kratky plot 1.104 0 √3 sRg
p(r)
ABC transporter periplasmic substrate-binding protein pair distance distribution function Rg: 2.4 nm 0 Dmax: 8.9 nm

Data validation

Fits and models

log I(s)
 s, nm-1
ABC transporter periplasmic substrate-binding protein BUNCH model
Synchrotron SAXS data from solutions of TupA measured in the presence of tungstate in 5 mM Tris-HCl, pH 7.6 were collected on the BM29 beam line at the ESRF storage ring (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.099 nm (I(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle). Solute concentrations ranging between 0.8 and 12 mg/ml were measured at 4.9°C. 10 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for protein concentration. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.

TupA measured in the presence of tungstate, fitted against the holo-form model.

ABC transporter periplasmic substrate-binding protein
Mol. type   Protein
Organism   Desulfovibrio alaskensis
Olig. state   Monomer
Mon. MW   29.7 kDa
 
UniProt   Q316W1
Sequence   FASTA
 
PDB ID   5MY5