The atypical thiol-disulfide exchange protein α-DsbA2 from Wolbachia pipientis is a homotrimeric disulfide isomerase.

Walden PM, Whitten AE, Premkumar L, Halili MA, Heras B, King GJ, Martin JL, Acta Crystallogr D Struct Biol 75(Pt 3):283-295 (2019) Europe PMC

SASDC28 – Mature α-DsbA2 protein

DsbA-like disulfide oxidoreductase (thiol-disulfide exchange protein)
MWI(0) 87 kDa
MWexpected 81 kDa
VPorod 913 nm3
log I(s) 4.84×10-2 4.84×10-3 4.84×10-4 4.84×10-5
DsbA-like disulfide oxidoreductase (thiol-disulfide exchange protein) small angle scattering data  s, nm-1
ln I(s)
DsbA-like disulfide oxidoreductase (thiol-disulfide exchange protein) Guinier plot ln 4.85×10-2 Rg: 2.8 nm 0 (2.8 nm)-2 s2
(sRg)2I(s)/I(0)
DsbA-like disulfide oxidoreductase (thiol-disulfide exchange protein) Kratky plot 1.104 0 3 sRg
p(r)
DsbA-like disulfide oxidoreductase (thiol-disulfide exchange protein) pair distance distribution function Rg: 2.8 nm 0 Dmax: 8.7 nm

Data validation


Fits and models


log I(s)
 s, nm-1
DsbA-like disulfide oxidoreductase (thiol-disulfide exchange protein) DAMMIN model

log I(s)
 s, nm-1
DsbA-like disulfide oxidoreductase (thiol-disulfide exchange protein) CORAL model

X-ray synchrotron radiation scattering data from the mature version of α-DsbA2 from Wolbachia pipientis in 25 mM TRIS 150mM NaCl pH 7.5 were collected on the SAXS/WAXS beam line of the Australian Synchrotron (Melbourne, Australia) in a SEC-SAXS configuration using a 2D Photon counting Pilatus 1M-W pixel detector (I(s) vs s, where s = 4π sin θ/λ and 2θ is the scattering angle; λ=0.1127 nm). Approximately 100 uL of 19.8 mg/ml protein solution were injected onto a WTC-030S5 column at a flow rate of 0.5 ml/min. Five hundred successive 5 second frames were collected during the SEC-SAXS run. The peak of the elution profile occured at ~18 mins after the start of the run, and the protein scattering was taken as the average of 8 frames collected 35-75 seconds after the peak eluted (the radius of gyration dropped to ~27.6 Ang at the peak concentration of ~2.2 mg/ml, so data was averaged at a region where the concentration was lower and concentration dependent effects were not apparent). The concentration range corresponding to the averaged frames was ~0.35 - 1.15 mg/ml, and the average concentration was taken as ~0.75 mg/ml. The buffer was taken as the sum of 100 frames collected between 3-9 mins after the start of the run. The data were normalized to the intensity of the transmitted beam and radially averaged and the scattering of the solvent-blank was subtracted. The models and corresponding fits include those derived from dummy-atom modelling using DAMMIN (top) and rigid-body modelling using CORAL (bottom).

DsbA-like disulfide oxidoreductase (thiol-disulfide exchange protein) (α-DsbA2)
Mol. type   Protein
Organism   Wolbachia endosymbiont of Drosophila melanogaster
Olig. state   Trimer
Mon. MW   27.1 kDa
 
UniProt   Q73FL6 (16-252)
Sequence   FASTA