Comparative studies of the low-resolution structure of two p23 co-chaperones for Hsp90 identified in Plasmodium falciparum genome.

Silva NSM, Seraphim TV, Minari K, Barbosa LRS, Borges JC, Int J Biol Macromol 108:193-204 (2018) Europe PMC

SASDC55 – Plasmodium falciparum p23A

CS domain protein, putative
MWexperimental 21 kDa
MWexpected 19 kDa
log I(s) 1.29×10-2 1.29×10-3 1.29×10-4 1.29×10-5
CS domain protein, putative small angle scattering data  s, nm-1
ln I(s)
CS domain protein, putative Guinier plot ln 1.29×10-2 Rg: 2.5 nm 0 (2.5 nm)-2 s2
(sRg)2I(s)/I(0)
CS domain protein, putative Kratky plot 1.104 0 3 sRg
p(r)
CS domain protein, putative pair distance distribution function Rg: 2.6 nm 0 Dmax: 8.5 nm

Data validation


Fits and models


log I(s)
 s, nm-1
CS domain protein, putative DAMFILT model

SAXS measurements were performed at the SAXS2 beam line located at the Brazilian Synchrotron Light Laboratory (LNLS), Campinas, São Paulo, Brazil. The X-ray scattering data (I(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle; λ = 0.1488 nm) were acquired using a two-dimension position-sensitive MARR-CCD detector and a sample-to-detector distance of ~1000 mm, corresponding to the q-range 0 < q < 0.35. In order to checking for protein aggregation or concentration-dependent effects, samples were prepared at various protein concentrations (2.5 mg/mL, 3 mg/mL and 5 mg/mL) in the buffer 25 mM Tris-HCl (pH 7.5), containing 150 mM NaCl, 2 mM EDTA and 1 mM β-mercaptoethanol. Samples were exposed to X-ray at different time frames (5 x 30 seconds, and 180 seconds) to investigate for X-ray damage. No radiation damage or concentration-dependent effect were observed. The model depicts the averaged spatial representation of the protein (DAMFILT occupancy and volume-corrected bead model).

CS domain protein, putative (Pfp23A)
Mol. type   Protein
Organism   Plasmodium falciparum
Olig. state   Monomer
Mon. MW   18.7 kDa
 
UniProt   Q8I2N9
Sequence   FASTA