Structural model of human dUTPase in complex with a novel proteinaceous inhibitor.

Nyíri K, Mertens HDT, Tihanyi B, Nagy GN, Kőhegyi B, Matejka J, Harris MJ, Szabó JE, Papp-Kádár V, Németh-Pongrácz V, Ozohanics O, Vékey K, Svergun DI, Borysik AJ, Vértessy BG, Sci Rep 8(1):4326 (2018) Europe PMC

SASDC57 – Deoxyuridine 5'-triphosphate nucleotidohydrolase

Deoxyuridine 5'-triphosphate nucleotidohydrolase
MWI(0) 35 kDa
MWexpected 54 kDa
VPorod 117 nm3
log I(s) 2.50×10-2 2.50×10-3 2.50×10-4 2.50×10-5
Deoxyuridine 5'-triphosphate nucleotidohydrolase small angle scattering data  s, nm-1
ln I(s)
Deoxyuridine 5'-triphosphate nucleotidohydrolase Guinier plot ln 2.50×10-2 Rg: 3 nm 0 (3 nm)-2 s2
(sRg)2I(s)/I(0)
Deoxyuridine 5'-triphosphate nucleotidohydrolase Kratky plot 1.104 0 3 sRg
p(r)
Deoxyuridine 5'-triphosphate nucleotidohydrolase pair distance distribution function Rg: 2.9 nm 0 Dmax: 10 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Deoxyuridine 5'-triphosphate nucleotidohydrolase DAMMIF model

log I(s)
 s, nm-1
Deoxyuridine 5'-triphosphate nucleotidohydrolase EOM/GAJOE model

Synchrotron SAXS data from solutions of Deoxyuridine 5'-triphosphate nucleotidohydrolase in 50 mM HEPES 300 mM NaCl 5 mM MgCl2, pH 7.5 were collected on the EMBL P12 beam line at the PETRA III storage ring (DESY; Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 3.1 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 0.2 and 2 mg/ml were measured at 10°C. 20 successive 0.050 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.

Deoxyuridine 5'-triphosphate nucleotidohydrolase (hDUT)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Trimer
Mon. MW   18.0 kDa
 
UniProt   P33316 (94-252)
Sequence   FASTA