Ca2+ - Induced Structural Change of Multi-Domain Collagen Binding Segments of Collagenases ColG and ColH from Hathewaya histolytica

Christopher E Ruth, University of Arkansas Dissertation - (2018) URL

SASDCN4 – Collagenase ColH s2as2bs3 at pCa 3

Collagenase ColH segement s2as2bs3
MWexperimental 34 kDa
MWexpected 34 kDa
VPorod 35 nm3
log I(s) 1.55×101 1.55×100 1.55×10-1 1.55×10-2
Collagenase ColH segement s2as2bs3 small angle scattering data  s, nm-1
ln I(s)
Collagenase ColH segement s2as2bs3 Guinier plot ln 1.56×101 Rg: 3.3 nm 0 (3.3 nm)-2 s2
(sRg)2I(s)/I(0)
Collagenase ColH segement s2as2bs3 Kratky plot 1.104 0 3 sRg
p(r)
Collagenase ColH segement s2as2bs3 pair distance distribution function Rg: 3.6 nm 0 Dmax: 13.6 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Collagenase ColH segement s2as2bs3 DAMMIF model

Synchrotron SAXS data from solutions of Collagenase ColH s2as2bs3 at pCa 3 in 10mM HEPES 100mM NaCl 0.2mM EGTA, pH 7.5 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; Berkeley, CA, USA) using a Pilatus3 X 2M detector at a sample-detector distance of 1.5 m and at a wavelength of λ = 0.1127 nm (I(s) vs s, where s = 4πsinθ/λ and 2θ is the scattering angle). Solute concentrations ranging between 2 and 5.5 mg/ml were measured at 10°C. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for protein concentration. The low angle data collected at lower concentrations were extrapolated to infinite dilution and merged with the higher concentration data to yield the final composite scattering curve. The model represents the averaged spatial representation of the protein (DAMFILT occupancy and volume-corrected bead model).

X-ray Exposure time = UNKNOWN. Number of frames = UNKNOWN

Collagenase ColH segement s2as2bs3 (s2as2bs3)
Mol. type   Protein
Organism   Hathewaya histolytica
Olig. state   Monomer
Mon. MW   34.2 kDa
 
UniProt   Q46085 (718-1021)
Sequence   FASTA