Conformational States of ABC Transporter MsbA in a Lipid Environment Investigated by Small-Angle Scattering Using Stealth Carrier Nanodiscs.

Josts I, Nitsche J, Maric S, Mertens HD, Moulin M, Haertlein M, Prevost S, Svergun DI, Busch S, Forsyth VT, Tidow H, Structure 26(8):1072-1079.e4 (2018) Europe PMC

SASDDD5 – MsbA in stealth nanodisc (SAXS)

Lipid A export ATP-binding/permease protein MsbA
Membrane scaffold protein 1D1 (deuterated, 75%)
1-palmitoyl-2-palmitoleoyl-sn-glycero-3-phosphocholine (deuteration: 78% head, 92% acyl)
MWexperimental 207 kDa
MWexpected 183 kDa
VPorod 607 nm3
log I(s) 1.25×10-1 1.25×10-2 1.25×10-3 1.25×10-4
Lipid A export ATP-binding/permease protein MsbA Membrane scaffold protein 1D1 (deuterated, 75%) 1-palmitoyl-2-palmitoleoyl-sn-glycero-3-phosphocholine (deuteration: 78% head, 92% acyl) small angle scattering data  s, nm-1
ln I(s)
Lipid A export ATP-binding/permease protein MsbA Membrane scaffold protein 1D1 (deuterated, 75%) 1-palmitoyl-2-palmitoleoyl-sn-glycero-3-phosphocholine (deuteration: 78% head, 92% acyl) Guinier plot ln 1.25×10-1 Rg: 4.8 nm 0 (4.8 nm)-2 s2
(sRg)2I(s)/I(0)
Lipid A export ATP-binding/permease protein MsbA Membrane scaffold protein 1D1 (deuterated, 75%) 1-palmitoyl-2-palmitoleoyl-sn-glycero-3-phosphocholine (deuteration: 78% head, 92% acyl) Kratky plot 1.104 0 3 sRg
p(r)
Lipid A export ATP-binding/permease protein MsbA Membrane scaffold protein 1D1 (deuterated, 75%) 1-palmitoyl-2-palmitoleoyl-sn-glycero-3-phosphocholine (deuteration: 78% head, 92% acyl) pair distance distribution function Rg: 4.8 nm 0 Dmax: 16 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of MsbA in stealth nanodisc (SAXS) in 30 mM Tris, 150 mM NaCl, pH 7.5 were collected on the EMBL P12 beam line at the PETRA III storage ring (DESY; Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 3.3 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 1 and 2.7 mg/ml were measured at 10°C. 20 successive 0.050 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

MsbA ABC transporter protein encapsulated in a partially deuterated "stealth-nanodisc": (sND). Disc components (MSP1D1 scaffold protein - 75% deuterated, and POPC lipid - heads/tails 78% and 92% deuterated). The expected molecular weight for this protein-lipid complex should correspond to that of the MsbA protein (~132 kDa) + 2 x MSP1D1 (2 x 24.7 kDa) + the contribution of the POPC lipids (760 Da per monomer).

Lipid A export ATP-binding/permease protein MsbA (MsbA)
Mol. type   Protein
Organism   Escherichia coli
Olig. state   Dimer
Mon. MW   66.3 kDa
 
UniProt   P60752
Sequence   FASTA
 
Membrane scaffold protein 1D1 (deuterated, 75%) (d75-msp1d1)
Mol. type   Protein
Olig. state   Dimer
Mon. MW   24.7 kDa
Sequence   FASTA
 
1-palmitoyl-2-palmitoleoyl-sn-glycero-3-phosphocholine (deuteration: 78% head, 92% acyl) (d(78,92)-POPC)
Mol. type   Other
Organism   Escherichia coli
Olig. state   Unknown
Mon. MW   0.8 kDa
Chemical formula