Size-exclusion chromatography small-angle X-ray scattering of water soluble proteins on a laboratory instrument.

Bucciarelli S, Midtgaard SR, Nors Pedersen M, Skou S, Arleth L, Vestergaard B, J Appl Crystallogr 51(Pt 6):1623-1632 (2018) Europe PMC

SASDE35 – Ovalbumin monomer from in-house SEC-SAXS

Ovalbumin
MWexperimental 40 kDa
MWexpected 43 kDa
VPorod 55 nm3
log I(s) 1.91×10-1 1.91×10-2 1.91×10-3 1.91×10-4
Ovalbumin small angle scattering data  s, nm-1
ln I(s)
Ovalbumin Guinier plot ln 1.91×10-1 Rg: 2.4 nm 0 (2.4 nm)-2 s2
(sRg)2I(s)/I(0)
Ovalbumin Kratky plot 1.104 0 √3 sRg
p(r)
Ovalbumin pair distance distribution function Rg: 2.4 nm 0 Dmax: 7.8 nm

Data validation

Fits and models

log I(s)
 s, nm-1
Ovalbumin PDB (PROTEIN DATA BANK) model
log I(s)
 s, nm-1
Ovalbumin DAMFILT model
SAXS data from solutions of Ovalbumin monomer from in-house SEC-SAXS in PBS, pH 7.4 were collected on a Xenocs BioXolver L instrument at the Copenhagen University, Department of Drug Design and Pharmacology (Copenhagen, Denmark) using a 20Hz Pilatus 300K detector at a sample-detector distance of 0.7 m and at a wavelength of λ = 0.134 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle).

The OVA sample (500 microlitres at 4.9 mg/ml) was injected onto a GE Healthcare S200 Increase 10/300 (24 ml) column at a flow rate of 0.1 ml/min at 23°C. A total of 150 x 30 second SAXS data frames were recorded throughout the OVA elution. After background solvent corrections, SEC-SAXS data frames 90-100, corresponding to monomeric OVA, were scaled, averaged and binned logarithmically to produce the data displayed in this entry. Additional files, including plots of the selected frames and of I(0), HPLC and exposure cell UV traces and Rg vs. time (determined by AUTORG) are included in the additional files of the full entry zip archive.

Ovalbumin (OVA)
Mol. type   Protein
Organism   Gallus gallus
Olig. state   Monomer
Mon. MW   42.8 kDa
 
UniProt   P01012
Sequence   FASTA
 
PDB ID   1OVA