Self association of LIM domain binding protein 1, LDB1

Jacqueline Matthews.

SASDF59 – LIM domain-binding protein 1 (Ldb1) self association domain

LIM domain-binding protein 1
MWI(0) 45 kDa
MWexpected 45 kDa
VPorod 80 nm3
log I(s) 1.29×10-2 1.29×10-3 1.29×10-4 1.29×10-5
LIM domain-binding protein 1 small angle scattering data  s, nm-1
ln I(s)
LIM domain-binding protein 1 Guinier plot ln 1.30×10-2 Rg: 2.5 nm 0 (2.5 nm)-2 s2
(sRg)2I(s)/I(0)
LIM domain-binding protein 1 Kratky plot 1.104 0 3 sRg
p(r)
LIM domain-binding protein 1 pair distance distribution function Rg: 2.5 nm 0 Dmax: 8.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
LIM domain-binding protein 1 PDB (PROTEIN DATA BANK) model

log I(s)
 s, nm-1
LIM domain-binding protein 1 PDB (PROTEIN DATA BANK) model

Synchrotron SAXS data from solutions Ldb1 self association domain in 20 mM Tris, 150 mM NaCl, 1 mM TCEP, pH 8 were collected on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus 1M detector at a sample-detector distance of 2.7 m and at a wavelength of λ = 0.103 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 0.40 mg/ml was measured at 13.6°C. 24 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

A five point concentration series was collected at the Australian Synchrotron and reduced to I(s) versus s. Parameters derived from the Guinier analysis showed a small concentration dependence of systematically increasing molecular mass (M) values from I(0). The M values were consistent with a predominantly dimeric for for all samples, the data suggest there may be somewhat less than complete dimerization at the lower concentration values, and potentially some further associations at the highest concentration values. Data is provided for the sample at 0.4 mg/ml where the M value is consistent with dimer.

LIM domain-binding protein 1 (LDB1)
Mol. type   Protein
Organism   Mus musculus
Olig. state   Dimer
Mon. MW   22.6 kDa
 
UniProt   P70662-3 (14-200)
Sequence   FASTA