R2SP

Raphael Dos Santos Morais.

SASDG42 – Truncated sperm-associated antigen 1 (622-926), PIH1 domain-containing protein 2 heterodimer complex (SPAG1(622-926)/PIH1D2)

PIH1 domain-containing protein 2
Sperm-associated antigen 1
MWexperimental 74 kDa
MWexpected 71 kDa
VPorod 123 nm3
log I(s) 4.62×10-2 4.62×10-3 4.62×10-4 4.62×10-5
PIH1 domain-containing protein 2 Sperm-associated antigen 1 small angle scattering data  s, nm-1
ln I(s)
PIH1 domain-containing protein 2 Sperm-associated antigen 1 Guinier plot ln 4.62×10-2 Rg: 5.0 nm 0 (5.0 nm)-2 s2
(sRg)2I(s)/I(0)
PIH1 domain-containing protein 2 Sperm-associated antigen 1 Kratky plot 1.104 0 3 sRg
p(r)
PIH1 domain-containing protein 2 Sperm-associated antigen 1 pair distance distribution function Rg: 5.2 nm 0 Dmax: 19.3 nm

Data validation


Fits and models


log I(s)
 s, nm-1
PIH1 domain-containing protein 2 Sperm-associated antigen 1 DAMMIF model

Synchrotron SAXS data from solutions of the SPAG1(622-926)/PIH1D2 complex in 20 mM HEPES, 150 mM NaCl, 1% glycerol, 5 mM TCEP, pH 7.5 were collected using size-exclusion chromatography SAXS (SEC-SAXS) on the SWING beam line at SOLEIL (Saint-Aubin, France) using a Eiger 4M detector at a sample-detector distance of 2 m and at a wavelength of λ = 0.1033 nm (l(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). SEC-SAXS was performed at 15°C using the following parameters: Column: Agilent Bio SEC-5, 500Å (4.6 mm id * 300 mm); Flow rate: 0.3 mL/min; Sample injection concentration: 6.6 mg/mL; Injection volume: 50 μL. The data were collected through the SEC peak of the protein as a series of 25 x 1 second exposures. Each unsubtracted data frame was normalised to the intensity of the transmitted beam and radially averaged and the scattering of an appropriate solvent-blank was subtracted. The resulting subtracted frames were scaled and averaged to generate the final SAXS profile displayed in this entry. The experimental molecular weight was determined from the volume of correlation, Vc.

Storage temperature = UNKNOWN

PIH1 domain-containing protein 2
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   36.2 kDa
 
UniProt   Q8WWB5 (1-315)
Sequence   FASTA
 
Sperm-associated antigen 1
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   34.9 kDa
 
UniProt   Q07617 (622-926)
Sequence   FASTA