c-di-AMP hydrolysis by a novel type of phosphodiesterase promotes differentiation of multicellular bacteria

Latoscha A, Drexler D, Al-Bassam M, Kaever V, Findlay K, Witte G, Tschowri N, (2019) DOI

SASDH25 – Actinobacterial phosphodiesterase targeting cyclic di-AMP (AtaC)

Alkaline phosphodiesterase I or Nucleotide pyrophosphatase
MWexperimental 38 kDa
MWexpected 46 kDa
VPorod 74 nm3
log I(s) 6.59×102 6.59×101 6.59×100 6.59×10-1
Alkaline phosphodiesterase I or Nucleotide pyrophosphatase small angle scattering data  s, nm-1
ln I(s)
Alkaline phosphodiesterase I or Nucleotide pyrophosphatase Guinier plot ln 6.60×102 Rg: 2.4 nm 0 (2.4 nm)-2 s2
(sRg)2I(s)/I(0)
Alkaline phosphodiesterase I or Nucleotide pyrophosphatase Kratky plot 1.104 0 3 sRg
p(r)
Alkaline phosphodiesterase I or Nucleotide pyrophosphatase pair distance distribution function Rg: 2.4 nm 0 Dmax: 7.8 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of AtaC in 20 mM HEPES, 200mM NaCl, pH 7.5 were collected on the EMBL P12 beam line at PETRA III (Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: 75 μl of an 8 mg/ml sample were injected onto a GE Superdex 200 Increase 10/300 column at 20°C (0.6 ml/min flow rate). 2400 successive 1 second frames were collected through the entire SEC run. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted from those data frames corresponding to the sample elution peak.

Alkaline phosphodiesterase I or Nucleotide pyrophosphatase (AtaC)
Mol. type   Protein
Organism   Streptomyces venezuelae
Olig. state   Monomer
Mon. MW   45.6 kDa
 
UniProt   F2R7Z6 (1-401)
Sequence   FASTA