Structural basis of client specificity in mitochondrial membrane-protein chaperones.

Sučec I, Wang Y, Dakhlaoui O, Weinhäupl K, Jores T, Costa D, Hessel A, Brennich M, Rapaport D, Lindorff-Larsen K, Bersch B, Schanda P, Sci Adv 6(51) (2020) Europe PMC

SASDH89 – Mitochondrial TIM8·13 chaperone in complex with the Tim23 membrane protein precursor

Mitochondrial import inner membrane translocase subunit TIM8
Mitochondrial import inner membrane translocase subunit TIM13
Mitochondrial import inner membrane translocase subunit TIM23
MWI(0) 94 kDa
MWexpected 87 kDa
log I(s) 2.89×101 2.89×100 2.89×10-1 2.89×10-2
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 small angle scattering data  s, nm-1
ln I(s)
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 Guinier plot ln 2.90×101 Rg: 3.1 nm 0 (3.1 nm)-2 s2
(sRg)2I(s)/I(0)
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 Kratky plot 1.104 0 3 sRg
p(r)
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 pair distance distribution function Rg: 3.1 nm 0 Dmax: 11.3 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 CUSTOM IN-HOUSE model
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 CUSTOM IN-HOUSE model
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 CUSTOM IN-HOUSE model
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 CUSTOM IN-HOUSE model
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 CUSTOM IN-HOUSE model
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 CUSTOM IN-HOUSE model
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 CUSTOM IN-HOUSE model
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 CUSTOM IN-HOUSE model
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 CUSTOM IN-HOUSE model
Mitochondrial import inner membrane translocase subunit TIM8 Mitochondrial import inner membrane translocase subunit TIM13 Mitochondrial import inner membrane translocase subunit TIM23 CUSTOM IN-HOUSE model

Synchrotron SAXS data from solutions of Mitochondrial TIM8·13 chaperone in complex with the Tim23 membrane protein precursor in 50 mM Tris, 150 mM NaCl, pH 7.4 were collected on the BM29 beam line at the ESRF storage ring (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.099 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 500.00 μl sample at 2.7 mg/ml was injected at a 0.20 ml/min flow rate onto a GE Superdex 200 10/300 column at 20°C. 21 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Mitochondrial import inner membrane translocase subunit TIM8
Mol. type   Protein
Organism   Saccharomyces cerevisiae
Olig. state   Trimer
Mon. MW   9.8 kDa
 
UniProt   P57744
Sequence   FASTA
 
Mitochondrial import inner membrane translocase subunit TIM13
Mol. type   Protein
Organism   Saccharomyces cerevisiae
Olig. state   Trimer
Mon. MW   11.2 kDa
 
UniProt   P53299
Sequence   FASTA
 
Mitochondrial import inner membrane translocase subunit TIM23
Mol. type   Protein
Organism   Saccharomyces cerevisiae
Olig. state   Monomer
Mon. MW   24.0 kDa
 
UniProt   P32897
Sequence   FASTA