Structural analysis of a new carotenoid-binding protein: the C-terminal domain homolog of the OCP

Dominguez-Martin M, Hammel M, Gupta S, Lechno-Yossef S, Sutter M, Rosenberg D, Chen Y, Petzold C, Ralston C, Polívka T, Kerfeld C, Scientific Reports 10(1) (2020) DOI

SASDHC6 – C-terminal domain-like carotenoid protein (CCP2), apo-dimer

C-terminal domain-like carotenoid protein

MW^experimental	36	kDa
MW^expected	33	kDa
V^Porod	55	nm³

log I(s) 6.35×10¹ 6.35×10⁰ 6.35×10^-1 6.35×10^-2

C-terminal domain-like carotenoid protein small angle scattering data

s, nm^-1

Log plot Log-Log plot

ln I(s)

C-terminal domain-like carotenoid protein Guinier plot

ln 6.35×10¹ R_g: 2.5 nm 0 (2.5 nm)^-2 s²

(sR_g)²I(s)/I(0)

C-terminal domain-like carotenoid protein Kratky plot

1.104 0 √3 sR_g

p(r)	R_g: 2.5 nm 0 D_max: 9.1 nm

Data validation

Fits and models

log I(s)	s, nm^-1
+3 Δ/σ -3	s, nm^-1

C-terminal domain-like carotenoid protein BILBOMD model

Synchrotron SAXS data from solutions of CCP2 apo-dimer in 10 mM potassium phosphate, 100 mM NaCl, pH 7 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; Berkeley, CA, USA) using a Pilatus3 X 2M detector at a sample-detector distance of 2.1 m and at a wavelength of λ = 0.1127 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 55.00 μl sample at 5 mg/ml was injected at a 0.50 ml/min flow rate onto a Shodex KW402.5-4F column at 20°C. 600 successive 3 second frames were collected through the SEC elution. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted from the appropriate sample elution peak frames.

Storage temperature = UNKNOWN

C-terminal domain-like carotenoid protein (CCP2)
Mol. type		Protein
Organism		Tolypothrix sp. PCC 7601
Olig. state		Dimer
Mon. MW		16.5 kDa
Sequence		FASTA