Distal Mutations Shape Substrate-Binding Sites during Evolution of a Metallo-Oxidase into a Laccase

Brissos V, Borges P, Núñez-Franco R, Lucas M, Frazão C, Monza E, Masgrau L, Cordeiro T, Martins L, ACS Catalysis :5022-5035 (2022) DOI

SASDHL8 – Aquifex aeolicus McoA metaloxidase evolved variant (2F4)

McoA evolved variant 2F4 (Periplasmic cell division protein (SufI))
MWexperimental 49 kDa
MWexpected 55 kDa
VPorod 78 nm3
log I(s) 1.63×102 1.63×101 1.63×100 1.63×10-1
McoA evolved variant 2F4 (Periplasmic cell division protein (SufI)) small angle scattering data  s, nm-1
ln I(s)
McoA evolved variant 2F4 (Periplasmic cell division protein (SufI)) Guinier plot ln 1.63×102 Rg: 2.3 nm 0 (2.3 nm)-2 s2
(sRg)2I(s)/I(0)
McoA evolved variant 2F4 (Periplasmic cell division protein (SufI)) Kratky plot 1.104 0 3 sRg
p(r)
McoA evolved variant 2F4 (Periplasmic cell division protein (SufI)) pair distance distribution function Rg: 2.3 nm 0 Dmax: 6.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
McoA evolved variant 2F4 (Periplasmic cell division protein (SufI)) OTHER model

log I(s)
 s, nm-1
McoA evolved variant 2F4 (Periplasmic cell division protein (SufI)) DAMMIF model

Synchrotron SAXS data from solutions of Aquifex aeolicus McoA metaloxidase evolved variant (2F4) in 50 mM Tris-HCl, 150 mM NaCl, 2 mM TCEP, pH 7.5 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.099 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 250 μl sample at 10 mg/ml was injected at a 0.50 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 20°C. 3000 successive 1 second frames were collected through the SEC elution. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted from the sample peak data frames.

The scattering intensity from the monomeric elution single-peak region were integrated and buffer subtracted to produce the SAXS-profile of 2F4 using the ScÅtter software. Further processing was performed using the ATSAS software suite.

McoA evolved variant 2F4 (Periplasmic cell division protein (SufI)) (2F4)
Mol. type   Protein
Organism   Aquifex aeolicus VF5
Olig. state   Monomer
Mon. MW   55.3 kDa
 
UniProt   O67206 (44-527)
Sequence   FASTA
 
PDB ID   6TTD