Biophysical Characterization of Cancer-Related Carbonic Anhydrase IX.

Koruza K, Murray AB, Mahon BP, Hopkins JB, Knecht W, McKenna R, Fisher SZ, Int J Mol Sci 21(15) (2020) Europe PMC

SASDHT5 – Human Carbonic Anhydrase IX

Carbonic anhydrase 9
MWexperimental 36 kDa
MWexpected 41 kDa
VPorod 71 nm3
log I(s) 2.90×100 2.90×10-1 2.90×10-2 2.90×10-3
Carbonic anhydrase 9 small angle scattering data  s, nm-1
ln I(s)
Carbonic anhydrase 9 Guinier plot ln 2.90×100 Rg: 2.5 nm 0 (2.5 nm)-2 s2
(sRg)2I(s)/I(0)
Carbonic anhydrase 9 Kratky plot 1.104 0 3 sRg
p(r)
Carbonic anhydrase 9 pair distance distribution function Rg: 2.6 nm 0 Dmax: 8.5 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Human Carbonic Anhydrase IX Rg histogram Rg, nm

Synchrotron SAXS data from solutions of carbonic anhydrase IX in 50 mM Tris, 150 mM NaCl, pH 7.5 were collected on the G1 beam line at the Cornell High Energy Synchrotron Source (CHESS; Ithaca, NY, USA) using a Pilatus 100K detector at a sample-detector distance of 1.5 m and at a wavelength of λ = 0.1245 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 150.00 μl sample at 1.5 mg/ml was injected at a 0.30 ml/min flow rate onto a GE Superdex 200 5/150 column at 4°C. 799 successive 1 second frames were collected through the SEC elution. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted from selected sample peak frames.

The Ensemble Optimization Method (EOM) results that include model representatives from the refined ensemble and the corresponding volume fractions, are made available in the full entry zip archive.

Carbonic anhydrase 9 (CA IX)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   41.0 kDa
 
UniProt   Q16790 (38-414)
Sequence   FASTA