The extracellular juncture domains in the intimin passenger adopt a constitutively extended conformation inducing restraints to its sphere of action.

Weikum J, Kulakova A, Tesei G, Yoshimoto S, Jægerum LV, Schütz M, Hori K, Skepö M, Harris P, Leo JC, Morth JP, Sci Rep 10(1):21249 (2020) Europe PMC

SASDJ94 – Intimin D0-D1 domain

Intimin (D0-D1 domain, 6xHis tagged)
MWI(0) 19 kDa
MWexpected 23 kDa
VPorod 34 nm3
log I(s) 3.98×103 3.98×102 3.98×101 3.98×100
Intimin (D0-D1 domain, 6xHis tagged) small angle scattering data  s, nm-1
ln I(s)
Intimin (D0-D1 domain, 6xHis tagged) Guinier plot ln 3.98×103 Rg: 2.2 nm 0 (2.2 nm)-2 s2
(sRg)2I(s)/I(0)
Intimin (D0-D1 domain, 6xHis tagged) Kratky plot 1.104 0 3 sRg
p(r)
Intimin (D0-D1 domain, 6xHis tagged) pair distance distribution function Rg: 2.1 nm 0 Dmax: 5.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Intimin D0-D1 domain Rg histogram Rg, nm
Intimin (D0-D1 domain, 6xHis tagged) EOM/RANCH model
Intimin (D0-D1 domain, 6xHis tagged) EOM/RANCH model

Synchrotron SAXS data from solutions of the intimin D0-D1 domain in 10 mM HEPES, pH 7.5 were collected on the EMBL P12 beam line at PETRA III (DESY, Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 4 m and at a wavelength of λ = 0.123981 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 1.1 and 12.4 mg/ml were measured . 20 successive 0.195 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.

The buffer before and the buffer after the sample did not match. Therefore, averaged data for buffer and for sample were scaled at high-s (starting from point nr 2000), resulting in the high noise at the high-s. All data analysis was focused on the low-s region (up to q=0.2 nm^-1). The models represent the ensemble state of the protein in solution.

Intimin (D0-D1 domain, 6xHis tagged) (D0-D1)
Mol. type   Protein
Organism   Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Olig. state   Monomer
Mon. MW   22.6 kDa
 
UniProt   P19809 (553-752)
Sequence   FASTA
 
PDB ID   6TPL