A molecular mechanism for LINC complex branching by structurally diverse SUN-KASH 6:6 assemblies.

Gurusaran M, Davies OR, Elife 10 (2021) Europe PMC

SASDJD5 – LINC complex between the SUN domain of SUN1 and KASH domain of KASH5 - SUN1-KASH5 6:6 complex

SUN domain-containing protein 1
Protein KASH5
MWexperimental 131 kDa
MWexpected 155 kDa
VPorod 244 nm3
log I(s) 1.01×10-1 1.01×10-2 1.01×10-3 1.01×10-4
SUN domain-containing protein 1 Protein KASH5 small angle scattering data  s, nm-1
ln I(s)
SUN domain-containing protein 1 Protein KASH5 Guinier plot ln 1.02×10-1 Rg: 3.8 nm 0 (3.8 nm)-2 s2
(sRg)2I(s)/I(0)
SUN domain-containing protein 1 Protein KASH5 Kratky plot 1.104 0 √3 sRg
p(r)
SUN domain-containing protein 1 Protein KASH5 pair distance distribution function Rg: 3.9 nm 0 Dmax: 13.5 nm

Data validation

Fits and models

log I(s)
 s, nm-1
SUN domain-containing protein 1 Protein KASH5 PDB (PROTEIN DATA BANK) model
log I(s)
 s, nm-1
SUN domain-containing protein 1 Protein KASH5 CORAL model
log I(s)
 s, nm-1
SUN domain-containing protein 1 Protein KASH5 DAMMIN model
SUN domain-containing protein 1 Protein KASH5 DAMMIN model
Synchrotron SAXS data from solutions of the KASH5/SUN1 6:6 complex in 20 mM Tris pH 8.0, 150 mM KCl, were collected on the B21 beam line at the Diamond Light Source (Didcot, UK) using a Pilatus 2M detector at a wavelength of λ = 0.095 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 100.00 μl sample at 12 mg/ml was injected at a 0.50 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 20°C. 25 successive 3 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Storage temperature = UNKNOWN. Sample detector distance = UNKNOWN

SUN domain-containing protein 1 (SUN1)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Hexamer
Mon. MW   22.5 kDa
 
UniProt   O94901 (616-812)
Sequence   FASTA
 
Protein KASH5 (KASH5)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Hexamer
Mon. MW   3.3 kDa
 
UniProt   Q8N6L0 (542-562)
Sequence   FASTA
 
PDB ID   6R2I
 
PDB ID   6R2I