The molecular dissection of TRIM25's RNA-binding mechanism provides key insights into its antiviral activity.

Álvarez L, Haubrich K, Iselin L, Gillioz L, Ruscica V, Lapouge K, Augsten S, Huppertz I, Choudhury NR, Simon B, Masiewicz P, Lethier M, Cusack S, Rittinger K, Gabel F, Leitner A, Michlewski G, Hentze MW, Allain FHT, Castello A, Hennig J, Nat Commun 15(1):8485 (2024) Europe PMC

SASDK88 – E3 ubiquitin/ISG15 ligase TRIM25 bound to pre-let-7-a-1@1 RNA (TRIM25/pre-let-7)

E3 ubiquitin/ISG15 ligase TRIM25
pre-let-7-a-1@1
MWexperimental 109 kDa
MWexpected 109 kDa
log I(s) 3.42×104 3.42×103 3.42×102 3.42×101
E3 ubiquitin/ISG15 ligase TRIM25 pre-let-7-a-1@1 small angle scattering data  s, nm-1
ln I(s)
E3 ubiquitin/ISG15 ligase TRIM25 pre-let-7-a-1@1 Guinier plot ln 3.42×104 Rg: 5.7 nm 0 (5.7 nm)-2 s2
(sRg)2I(s)/I(0)
E3 ubiquitin/ISG15 ligase TRIM25 pre-let-7-a-1@1 Kratky plot 1.104 0 3 sRg
p(r)
E3 ubiquitin/ISG15 ligase TRIM25 pre-let-7-a-1@1 pair distance distribution function Rg: 5.7 nm 0 Dmax: 19.8 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of TRIM25/pre-let-7 in 20 mM MES, 75 mM NaCl, 1 mM TCEP, pH 6.5 were collected on the EMBL P12 beam line at PETRA III (DESY, Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.125 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 1.00 mg/ml was measured at 25°C. 100 successive 0.050 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The concentration estimate quoted for this entry is likely inaccurate due to the uncertainty of the complex's molar extinction coefficient (protein plus RNA).

E3 ubiquitin/ISG15 ligase TRIM25 (TRIM25)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Dimer
Mon. MW   50.1 kDa
 
UniProt   Q14258 (189-630)
Sequence   FASTA
 
pre-let-7-a-1@1 (pre-let-7)
Mol. type   RNA
Organism   synthetic construct
Olig. state   Monomer
Mon. MW   8.9 kDa
Sequence   FASTA