The Induction Mechanism of the Flavonoid-Responsive Regulator FrrA.

Werner N, Werten S, Hoppen J, Palm GJ, Göttfert M, Hinrichs W, FEBS J (2021) Europe PMC

SASDKC6 – Flavonoid-responsive regulator A (FrrA) in the presence of naringenin

TetR/AcrR family transcriptional regulator
5,7-dihydroxy-2-(4-hydroxyphenyl)chroman-4-one
MWI(0) 41 kDa
MWexpected 48 kDa
VPorod 91 nm3
log I(s) 6.84×103 6.84×102 6.84×101 6.84×100
TetR/AcrR family transcriptional regulator 5,7-dihydroxy-2-(4-hydroxyphenyl)chroman-4-one small angle scattering data  s, nm-1
ln I(s)
TetR/AcrR family transcriptional regulator 5,7-dihydroxy-2-(4-hydroxyphenyl)chroman-4-one Guinier plot ln 6.84×103 Rg: 3.2 nm 0 (3.2 nm)-2 s2
(sRg)2I(s)/I(0)
TetR/AcrR family transcriptional regulator 5,7-dihydroxy-2-(4-hydroxyphenyl)chroman-4-one Kratky plot 1.104 0 3 sRg
p(r)
TetR/AcrR family transcriptional regulator 5,7-dihydroxy-2-(4-hydroxyphenyl)chroman-4-one pair distance distribution function Rg: 3.0 nm 0 Dmax: 8.6 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of FrrA in 20 mM Na2HPO4, 50 mM NaCl, 50 mM imidazole, 1 mM naringenin, pH 7.5 were collected on the EMBL P12 beam line at PETRA III (DESY, Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 3.1 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 1.0 and 2.6 mg/ml were measured at 10°C. 20 successive 0.050 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.

Storage temperature = UNKNOWN

TetR/AcrR family transcriptional regulator (FrrA)
Mol. type   Protein
Organism   Bradyrhizobium diazoefficiens
Olig. state   Dimer
Mon. MW   23.8 kDa
 
UniProt   A0A2A6N3G4 (19-229)
Sequence   FASTA
 
5,7-dihydroxy-2-(4-hydroxyphenyl)chroman-4-one (Naringenin)
Mol. type   Other
Olig. state   Monomer
Mon. MW   0.3 kDa
Chemical formula