Identification and structural analysis of the Schizosaccharomyces pombe SMN complex

Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U, Nucleic Acids Research (2021) DOI

SASDKE5 – the Survival Motor Neuron complex (Gemin2/SMN/Gemin8/Gemin7/Gemin6) from Schizosaccharomyces pombe, 0.173 g/L

Survival motor neuron-like protein 1
Uncharacterized protein C16H5.15 (Gemin8 Δ35-58)
Gem-associated protein 7 homolog (Gemin7)
Uncharacterized protein new12 (Gemin6)
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80)
MWI(0) 212 kDa
MWexpected 74 kDa
log I(s) 1.41×101 1.41×100 1.41×10-1 1.41×10-2
Survival motor neuron-like protein 1 Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) Gem-associated protein 7 homolog (Gemin7) Uncharacterized protein new12 (Gemin6) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) small angle scattering data  s, nm-1
ln I(s)
Survival motor neuron-like protein 1 Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) Gem-associated protein 7 homolog (Gemin7) Uncharacterized protein new12 (Gemin6) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Guinier plot ln 1.42×101 Rg: 6.3 nm 0 (6.3 nm)-2 s2
(sRg)2I(s)/I(0)
Survival motor neuron-like protein 1 Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) Gem-associated protein 7 homolog (Gemin7) Uncharacterized protein new12 (Gemin6) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Kratky plot 1.104 0 3 sRg
p(r)
Survival motor neuron-like protein 1 Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) Gem-associated protein 7 homolog (Gemin7) Uncharacterized protein new12 (Gemin6) Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) pair distance distribution function Rg: 6.9 nm 0 Dmax: 21.3 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of the Survival Motor Neuron complex (Gemin2/SMN/Gemin8/Gemin7/Gemin6) from Schizosaccharomyces pombe, 0.173 g/L in 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH 7.5 were collected on the BM29 beam line at the ESRF storage ring (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.09919 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A sample at 3 mg/ml was injected at a 1.00 ml/min flow rate onto a GE Superdex 200 10/300 column at 20°C. 1800 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

For this entry, frame 800 was individually chosen and background subtracted using CHROMIXS. Concentration at this frame was determined from the UV280 trace, and was found to be 0.173 g/L (2.3 µM).

Survival motor neuron-like protein 1 (SMN)
Mol. type   Protein
Organism   Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Olig. state   Monomer
Mon. MW   17.4 kDa
 
UniProt   Q09808 (1-152)
Sequence   FASTA
 
Uncharacterized protein C16H5.15 (Gemin8 Δ35-58) (Gemin8 Δ35-58)
Mol. type   Protein
Organism   Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Olig. state   Monomer
Mon. MW   17.2 kDa
 
UniProt   Q9USY8
Sequence   FASTA
 
Gem-associated protein 7 homolog (Gemin7) (Gemin7)
Mol. type   Protein
Organism   Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Olig. state   Monomer
Mon. MW   10.3 kDa
 
UniProt   G2TRR1 (1-91)
Sequence   FASTA
 
Uncharacterized protein new12 (Gemin6) (Gemin6)
Mol. type   Protein
Organism   Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Olig. state   Monomer
Mon. MW   10.6 kDa
 
UniProt   G2TRK8 (1-93)
Sequence   FASTA
 
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) (Gemin2 ΔN80)
Mol. type   Protein
Organism   Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Olig. state   Monomer
Mon. MW   18.0 kDa
 
UniProt   P0CU08 (81-235)
Sequence   FASTA