Identification and structural analysis of the Schizosaccharomyces pombe SMN complex

Veepaschit J, Viswanathan A, Bordonné R, Grimm C, Fischer U, Nucleic Acids Research (2021) DOI

SASDKF5 – the Gemin2/delta linker Survival Motor Neuron-like protein 1 (SMN1, Δ36-119, S130D) complex from Schizosaccharomyces pombe

Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80)
Survival motor neuron-like protein 1 (Δ36-119)
MWexperimental 53 kDa
MWexpected 26 kDa
log I(s) 2.63×101 2.63×100 2.63×10-1 2.63×10-2
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Survival motor neuron-like protein 1 (Δ36-119) small angle scattering data  s, nm-1
ln I(s)
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Survival motor neuron-like protein 1 (Δ36-119) Guinier plot ln 2.64×101 Rg: 2.7 nm 0 (2.7 nm)-2 s2
(sRg)2I(s)/I(0)
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Survival motor neuron-like protein 1 (Δ36-119) Kratky plot 1.104 0 3 sRg
p(r)
Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) Survival motor neuron-like protein 1 (Δ36-119) pair distance distribution function Rg: 2.8 nm 0 Dmax: 9.0 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of the Gemin2/delta linker Survival Motor Neuron-like protein 1 (SMN1, Δ36-119, S130D) complex from Schizosaccharomyces pombe in 150 mM NaCl, 20 mM HEPES, 1 mM DTT, pH 7.5 were collected on the BM29 beam line at the ESRF storage ring (Grenoble, France) using a Pilatus 1M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.09919 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A sample at 3 mg/ml was injected at a 1.00 ml/min flow rate onto a GE Superdex 200 10/300 column at 20°C. 1800 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

For this entry, SEC-SAXS frames 969-988 were scaled and averaged and background subtracted using scaled and averaged buffer frames 503-693. Peak concentration of the chromatogram determined from UV280 trace was at 1.28 g/L (~49 µM).

Survival of motor neuron protein-interacting protein yip11 (Gemin2 ΔN80) (Gemin2 ΔN80)
Mol. type   Protein
Organism   Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Olig. state   Monomer
Mon. MW   18.0 kDa
 
UniProt   P0CU08 (81-235)
Sequence   FASTA
 
Survival motor neuron-like protein 1 (Δ36-119) (SMN1 Δ36-119)
Mol. type   Protein
Organism   Schizosaccharomyces pombe
Olig. state   Monomer
Mon. MW   8.2 kDa
 
UniProt   Q09808
Sequence   FASTA