Nucleosome scaffolding by Brd4 tandem bromodomains in acetylation-dependent chromatin compartmentalization

Olp M, Jackson V, Smith B, (2019) DOI

SASDKJ7 – Bromodomain testis-specific protein, BRDT, tandem bromodomains (5 mg/ml)

Bromodomain testis-specific protein
MWexperimental 60 kDa
MWexpected 42 kDa
VPorod 120 nm3
log I(s) 3.25×101 3.25×100 3.25×10-1 3.25×10-2
Bromodomain testis-specific protein small angle scattering data  s, nm-1
ln I(s)
Bromodomain testis-specific protein Guinier plot ln 3.25×101 Rg: 5.0 nm 0 (5.0 nm)-2 s2
(sRg)2I(s)/I(0)
Bromodomain testis-specific protein Kratky plot 1.104 0 √3 sRg
p(r)
Bromodomain testis-specific protein pair distance distribution function Rg: 5.4 nm 0 Dmax: 19.2 nm

Data validation

There are no models related to this curve.

Synchrotron SAXS data from solutions of Bromodomain testis-specific protein, BRDT, tandem bromodomains (5 mg/ml) in 25 mM HEPES, 150 mM NaCl, and 2% glycerol, pH 7.5 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS) storage ring (Berkeley, CA, USA) using a Pilatus3 X 2M detector at a sample-detector distance of 2 m and at a wavelength of λ = 0.127 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 5.00 mg/ml was measured at 10°C. 32 successive 0.300 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Bromodomain testis-specific protein (BRDT)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   42.1 kDa
 
UniProt   Q58F21 (18-383)
Sequence   FASTA