A Structural Basis for Inhibition of the Complement Initiator Protease C1r by Lyme Disease Spirochetes.

Garrigues RJ, Powell-Pierce AD, Hammel M, Skare JT, Garcia BL, J Immunol 207(11):2856-2867 (2021) Europe PMC

SASDKV7 – CCP2-SP domains of the complement C1r subcomponent

Complement C1r subcomponent
MWexperimental 32 kDa
MWexpected 38 kDa
VPorod 63 nm3
log I(s) 7.21×100 7.21×10-1 7.21×10-2 7.21×10-3
Complement C1r subcomponent small angle scattering data  s, nm-1
ln I(s)
Complement C1r subcomponent Guinier plot ln 7.22×100 Rg: 2.4 nm 0 (2.4 nm)-2 s2
(sRg)2I(s)/I(0)
Complement C1r subcomponent Kratky plot 1.104 0 3 sRg
p(r)
Complement C1r subcomponent pair distance distribution function Rg: 2.6 nm 0 Dmax: 7.9 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Complement C1r subcomponent PYMOL model

Synchrotron SAXS data from solutions of the complement C1r CCP2-SP domains in 10 mM HEPES, pH 7.3, 140 mM NaCl, were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; (Berkeley, CA, USA) using a Pilatus3 X 2M detector at a sample-detector distance of 2.1 m and at a wavelength of λ = 0.1127 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 55.00 μl sample at 2 mg/ml was injected at a 0.50 ml/min flow rate onto a Shodex KW-802.5 column at 20°C. 3 second X-ray exposures were collected continuously during the entire 30 min elution.The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted from the appropriate sample peak frames.

The beam line is equipped with an online Agilent 1260 Infinity HPLC system with a series of UV at 280 and 260 nm, multi-angle light scattering (MALS), quasi-elastic light scattering (QELS), and refractometer detectors. MALS experiments were performed using an 18-angle DAWN HELEOS II light scattering detector connected in tandem to an Optilab refractive index concentration detector (Wyatt Technology).

Complement C1r subcomponent (C1R-CCP2-SP)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   37.8 kDa
 
UniProt   P00736 (375-705)
Sequence   FASTA
 
PDB ID   1MD8