Structural basis underlying the synergism of NADase and SLO during group A Streptococcus infection.

Tsai WJ, Lai YH, Shi YA, Hammel M, Duff AP, Whitten AE, Wilde KL, Wu CM, Knott R, Jeng US, Kang CY, Hsu CY, Wu JL, Tsai PJ, Chiang-Ni C, Wu JJ, Lin YS, Liu CC, Senda T, Wang S, Commun Biol 6(1):124 (2023) Europe PMC

SASDM47 – NAD glycohydrolase (NADase)

NAD glycohydrolase
MWexperimental 47 kDa
MWexpected 47 kDa
VPorod 66 nm3
log I(s) 2.34×102 2.34×101 2.34×100 2.34×10-1
NAD glycohydrolase small angle scattering data  s, nm-1
ln I(s)
NAD glycohydrolase Guinier plot ln 2.34×102 Rg: 3.0 nm 0 (3.0 nm)-2 s2
(sRg)2I(s)/I(0)
NAD glycohydrolase Kratky plot 1.104 0 3 sRg
Dmax: 103 nm

Data validation


Fits and models


log I(s)
 s, nm-1
NAD glycohydrolase BILBOMD model
NAD glycohydrolase BILBOMD model

Synchrotron SAXS data from solutions of NADase in phosphate buffered saline, pH 7.4 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS; Berkeley, CA, USA) using a Pilatus3 X 2M detector at a sample-detector distance of 1.5 m and at a wavelength of λ = 0.103 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 10 mg/ml was injected at a 0.50 ml/min flow rate onto a Shodex KW-800 series column at 20°C. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted from those sample frames encompassing the SEC elution peak.

The multistate model of NADase is composed of a 40% volume fraction of compact and a 60% volume fraction of extended states, respectively.

NAD glycohydrolase (NADase)
Mol. type   Protein
Organism   Streptococcus pyogenes M1 476
Olig. state   Monomer
Mon. MW   47.2 kDa
 
UniProt   J7M2L4 (41-454)
Sequence   FASTA