Effect of the concentration of protein and nanoparticles on the structure of biohybrid nanocomposites.

Majorošová J, Schroer MA, Tomašovičová N, Batková M, Hu PS, Kubovčíková M, Svergun DI, Kopčanský P, Biopolymers 111(2):e23342 (2020) Europe PMC

SASDML4 – LAF + MNP (r = 5.6 nm) nanocomposite

lysozyme amyloid fibril
Fe3O4 nanoparticles; radius 5.6 nm (AFM based)
MWexperimental 1 kDa
MWexpected 2 kDa
log I(s) 7.53×106 7.53×105 7.53×104 7.53×103
lysozyme amyloid fibril Fe3O4 nanoparticles; radius 5.6 nm (AFM based) small angle scattering data  s, nm-1
ln I(s)
lysozyme amyloid fibril Fe3O4 nanoparticles; radius 5.6 nm (AFM based) Guinier plot ln 7.54×106 Rg: 29.4 nm 0 (29.4 nm)-2 s2
(sRg)2I(s)/I(0)
lysozyme amyloid fibril Fe3O4 nanoparticles; radius 5.6 nm (AFM based) Kratky plot 1.104 0 3 sRg
p(r)
lysozyme amyloid fibril Fe3O4 nanoparticles; radius 5.6 nm (AFM based) pair distance distribution function Rg: 29.3 nm 0 Dmax: 80 nm

Data validation


Fits and models


log I(s)
 s, nm-1
lysozyme amyloid fibril Fe3O4 nanoparticles; radius 5.6 nm (AFM based) DAMMIF model

Synchrotron SAXS data from solutions of LAF + MNP (r = 5.6 nm) nanocomposite in 0.2 M glycine-HCl, 80 mM NaCl, pH 2.2 were collected on the EMBL P12 beam line at the PETRA III storage ring (DESY; Hamburg, Germany) using a Pilatus 2M detector at a sample-detector distance of 4.2 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). at 20°C. 20 successive 0.100 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Magnetite nanoparticles were fabricated by the coprecipitation of Fe2+ and Fe3+ by NH4OH at 60 °C. Afterwards, an magnetic fluid (MF) was obtained by dispersion of the freshly prepared magnetite nanoparticles in water and electrostatically stabilized by the addition of HClO4. The final concentration of MNPs in the MF was 28 mg/mL. The hydrodynamic diameter of the MNPs, determined by dynamic light scattering (DLS) (Zetasizer), has a nominal size of 26 nm alongside polydispersity of 0.26, and the radius of MNPs estimated from AFM was 5.6 nm. Theoretical SAXS profile computed by DAMMIX analysis of a concentration series from LAF and MNP (r = 5.6 nm) nanoparticles (in air SAXS). SVD analysis showed the presence of a third component in the mixture, which was identified as this nanocomposite.

Tags: softmatter
lysozyme amyloid fibril (LAF)
Mol. type   Protein
Organism   Gallus gallus
Olig. state   Unknown
Mon. MW   1 kDa
 
UniProt   P00698
Sequence   FASTA
 
Fe3O4 nanoparticles; radius 5.6 nm (AFM based) (MNP)
Mol. type   Other
Olig. state   Monomer
Mon. MW   1 kDa
Chemical formula