Leucine Rich Repeat And Sterile Alpha Motif Containing 1 (LRSAM1)

Si Hoon Park.

SASDMN3 – Wild type E3 ubiquitin-protein ligase LRSAM1

E3 ubiquitin-protein ligase LRSAM1
MWexperimental 170 kDa
MWexpected 84 kDa
VPorod 250 nm3
log I(s) 9.23×10-4 9.23×10-5 9.23×10-6 9.23×10-7
E3 ubiquitin-protein ligase LRSAM1 small angle scattering data  s, nm-1
ln I(s)
E3 ubiquitin-protein ligase LRSAM1 Guinier plot ln 9.24×10-4 Rg: 6.1 nm 0 (6.1 nm)-2 s2
(sRg)2I(s)/I(0)
E3 ubiquitin-protein ligase LRSAM1 Kratky plot 1.104 0 3 sRg
p(r)
E3 ubiquitin-protein ligase LRSAM1 pair distance distribution function Rg: 6.2 nm 0 Dmax: 19.4 nm

Data validation


Fits and models


log I(s)
 s, nm-1
E3 ubiquitin-protein ligase LRSAM1 DAMFILT model
E3 ubiquitin-protein ligase LRSAM1 DAMMIN model

Synchrotron SAXS data from solutions of LRSAM1 in 25 mM Tris-HCl pH 8.0, 150 mM NaCl, 1 mM TCEP, pH 8 were collected on the BL-10C beam line at the Photon Factory (PF), High Energy Accelerator Research Organization (KEK; Tsukuba, Japan) using a Pilatus3 2M detector at a sample-detector distance of 3.0 m and at a wavelength of λ = 0.1 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 240.00 μl sample at 4.8 mg/ml was injected at a 0.05 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 20°C. 200 successive 5 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The models displayed show both the average-weighted bead-occupancy and volume-corrected representation of the protein calculated from the spatial alignment of a cohort of individual models (damfilt; top) and an individual model reconstruction (bottom) with the associated fit to the data.

E3 ubiquitin-protein ligase LRSAM1 (LRSAM1)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   83.7 kDa
 
UniProt   Q6UWE0 (1-723)
Sequence   FASTA