Leucine Rich Repeat And Sterile Alpha Motif Containing 1 (LRSAM1)

Si Hoon Park.

SASDMS3 – Wild type E3 ubiquitin-protein ligase LRSAM1 (80-171): domains LRR3-6 in the Repebody scaffold

E3 ubiquitin-protein ligase LRSAM1
MWexperimental 29 kDa
MWexpected 30 kDa
VPorod 43 nm3
log I(s) 1.34×101 1.34×100 1.34×10-1 1.34×10-2
E3 ubiquitin-protein ligase LRSAM1 small angle scattering data  s, nm-1
ln I(s)
E3 ubiquitin-protein ligase LRSAM1 Guinier plot ln 1.34×101 Rg: 2.5 nm 0 (2.5 nm)-2 s2
(sRg)2I(s)/I(0)
E3 ubiquitin-protein ligase LRSAM1 Kratky plot 1.104 0 3 sRg
p(r)
E3 ubiquitin-protein ligase LRSAM1 pair distance distribution function Rg: 2.5 nm 0 Dmax: 8.3 nm

Data validation


Fits and models


log I(s)
 s, nm-1
E3 ubiquitin-protein ligase LRSAM1 DAMFILT model
E3 ubiquitin-protein ligase LRSAM1 DAMMIN model

Synchrotron SAXS data from solutions of LRSAM1 (amino acids 80-171) in 50 mM Tris-HCl pH 8.0, 150 mM NaCl, 1 mM TCEP, pH 8 were collected on the 4C beam line at the Pohang Accelerator Laboratory (Pohang, South Korea) using a Rayonix SX165 detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.0734 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 1.7 and 4.6 mg/ml were measured at 20°C. Six successive 10 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentrations were extrapolated to infinite dilution and merged with the higher concentration data to yield the final composite scattering curve.

The models displayed show both the average-weighted bead-occupancy and volume-corrected representation of the protein calculated from the spatial alignment of a cohort of individual models (damfilt; top) and an individual model reconstruction (bottom) with the associated fit to the data.

E3 ubiquitin-protein ligase LRSAM1 (LRSAM1)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   29.8 kDa
 
UniProt   Q6UWE0 (80-171)
Sequence   FASTA