Structural plasticity of the coiled-coil interactions in human SFPQ.

Koning HJ, Lai JY, Marshall AC, Stroeher E, Monahan G, Pullakhandam A, Knott GJ, Ryan TM, Fox AH, Whitten A, Lee M, Bond CS, Nucleic Acids Res (2024) Europe PMC

SASDMV7 – The tetramer of splicing factor, proline- and glutamine-rich and Non-POU domain-containing octamer-binding protein (SFPQ214-598(R542C)/NONO53-312)

Splicing factor, proline- and glutamine-rich
Non-POU domain-containing octamer-binding protein
MWexperimental 208 kDa
MWexpected 213 kDa
VPorod 304 nm3
log I(s) 6.39×10-2 6.39×10-3 6.39×10-4 6.39×10-5
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein small angle scattering data  s, nm-1
ln I(s)
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein Guinier plot ln 6.40×10-2 Rg: 5.5 nm 0 (5.5 nm)-2 s2
(sRg)2I(s)/I(0)
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein Kratky plot 1.104 0 3 sRg
p(r)
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein pair distance distribution function Rg: 5.6 nm 0 Dmax: 20.4 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein PDB (PROTEIN DATA BANK) model

log I(s)
 s, nm-1
Splicing factor, proline- and glutamine-rich Non-POU domain-containing octamer-binding protein DAMMIF model

Synchrotron SAXS data from solutions of SFPQ214-598(R542C)/NONO53-312 in 20 mM Tris pH 7.5, 250 mM NaCl, were collected on the SAXS/WAXS beam line at the Australian Synchrotron (Melbourne, Australia) using a Pilatus3 S 2M detector at a sample-detector distance of 3.5 m and at a wavelength of λ = 0.107812 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 60.00 μl sample at 6.8 mg/ml was injected onto a GE Superdex 200 Increase 5/150 column at 25°C. 700 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

A tetramer of SFPQ214-598(R542C)/NONO53-312 which forms when dimers of SFPQ214-598(R542C)/NONO53-312 bind to each other and become cross-linked by the formation of disulphide bond between the coiled-coil domains of SFPQ. Imperfect CRYSOL fit of our experimental data to a crystal structure of an SFPQ/NONO tetramer (6WMZ formatted as a tetramer). Our experimental construct contains additional residues (SFPQ214-275) which are not present in the crystal. The DAMMIF model conforms to the expected shape of a dumbbell. This matches the general shape of the crystal structure 6WMZ (as a tetramer). The additional regions below the DAMMIF model could be the contributions to the form factor from the DNA-binding domain (SFPQ214-275 which is predicted to be unstructured).

Splicing factor, proline- and glutamine-rich (SFPQ cysteine dimer)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Dimer
Mon. MW   76.3 kDa
 
UniProt   P23246 (214-707)
Sequence   FASTA
 
Non-POU domain-containing octamer-binding protein (NONO dimer)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Dimer
Mon. MW   30.1 kDa
 
UniProt   Q15233 (53-312)
Sequence   FASTA
 
PDB ID   6WMZ