Herpes simplex virus 1 protein pUL21 alters ceramide metabolism by activating the inter-organelle transport protein CERT

Benedyk T, Connor V, Caroe E, Shamin M, Svergun D, Deane J, Jeffries C, Crump C, Graham S, Journal of Biological Chemistry :102589 (2022) DOI

SASDND7 – Complex of H6-pUL21C and H6-miniCERTL

Tegument protein UL21 (C-terminal domain)
Ceramide transfer protein (recombinant CERTL: amino acids 20-130 and 351-624)
MWexperimental 56 kDa
MWexpected 74 kDa
VPorod 84 nm3
log I(s) 1.58×10-2 1.58×10-3 1.58×10-4 1.58×10-5
Tegument protein UL21 (C-terminal domain) Ceramide transfer protein (recombinant CERTL: amino acids 20-130 and 351-624) small angle scattering data  s, nm-1
ln I(s)
Tegument protein UL21 (C-terminal domain) Ceramide transfer protein (recombinant CERTL: amino acids 20-130 and 351-624) Guinier plot ln 1.59×10-2 Rg: 3.3 nm 0 (3.3 nm)-2 s2
(sRg)2I(s)/I(0)
Tegument protein UL21 (C-terminal domain) Ceramide transfer protein (recombinant CERTL: amino acids 20-130 and 351-624) Kratky plot 1.104 0 3 sRg
p(r)
Tegument protein UL21 (C-terminal domain) Ceramide transfer protein (recombinant CERTL: amino acids 20-130 and 351-624) pair distance distribution function Rg: 3.5 nm 0 Dmax: 13.6 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Tegument protein UL21 (C-terminal domain) Ceramide transfer protein (recombinant CERTL: amino acids 20-130 and 351-624) GASBOR model

log I(s)
 s, nm-1
Tegument protein UL21 (C-terminal domain) Ceramide transfer protein (recombinant CERTL: amino acids 20-130 and 351-624) CORAL model

log I(s)
 s, nm-1
Tegument protein UL21 (C-terminal domain) Ceramide transfer protein (recombinant CERTL: amino acids 20-130 and 351-624) CORAL model

Synchrotron SAXS data from solutions of Complex of H6-pUL21C and H6-miniCERTL in 20 mM Tris pH 8.5, 500 mM NaCl, 3% (v/v) glycerol, 1 mM DTT, pH 8.5 were collected on the EMBL P12 beam line at the PETRA III storage ring (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 40.00 μl sample at 4.3 mg/ml was injected at a 0.35 ml/min flow rate onto a GE Superdex 200 Increase 5/150 column at 20°C. 47 successive 0.100 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Tegument protein UL21 (C-terminal domain) (H6-pUL21C)
Mol. type   Protein
Organism   Human herpesvirus 1 (strain 17)
Olig. state   Monomer
Mon. MW   29.3 kDa
 
UniProt   P10205 (275-535)
Sequence   FASTA
 
Ceramide transfer protein (recombinant CERTL: amino acids 20-130 and 351-624) (miniCERTL)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   44.9 kDa
 
UniProt   Q9Y5P4
Sequence   FASTA