Molecular architecture of the glycogen- committed PP1/PTG holoenzyme.

Semrau MS, Giachin G, Covaceuszach S, Cassetta A, Demitri N, Storici P, Lolli G, Nat Commun 13(1):6199 (2022) Europe PMC

SASDNG2 – Serine/threonine-protein phosphatase (PP1) bound to Protein phosphatase 1 (PTG) and cyclodextrin

Serine/threonine-protein phosphatase PP1-alpha catalytic subunit
Protein phosphatase 1 regulatory subunit 3C
MWexperimental 61 kDa
MWexpected 60 kDa
VPorod 89 nm3
log I(s) 1.37×102 1.37×101 1.37×100 1.37×10-1
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit Protein phosphatase 1 regulatory subunit 3C small angle scattering data  s, nm-1
ln I(s)
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit Protein phosphatase 1 regulatory subunit 3C Guinier plot ln 1.38×102 Rg: 3.6 nm 0 (3.6 nm)-2 s2
(sRg)2I(s)/I(0)
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit Protein phosphatase 1 regulatory subunit 3C Kratky plot 1.104 0 3 sRg
p(r)
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit Protein phosphatase 1 regulatory subunit 3C pair distance distribution function Rg: 3.7 nm 0 Dmax: 12.3 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit Protein phosphatase 1 regulatory subunit 3C DAMFILT model

Synchrotron SAXS data from solutions of Serine/threonine-protein phosphatase (PP1) bound to Protein phosphatase 1 (PTG) and cyclodextrin in 50 mM Tris pH 8.0, 0.5 M NaCl, 10% glycerol, 1 mM DTT, pH 8 were collected on the BM29 beam line at the ESRF storage ring (Grenoble, France) using a Pilatus3 2M detector at a wavelength of λ = 0.09 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 6.5 mg/ml was injected at a 0.30 ml/min flow rate onto a Agilent AdvanceBio SEC 130Å, 4.6 x 50 mm column . The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

I(s) versus s experimental SAXS profile for PTG-PP1 complex bound to 1 molecule of cyclodextrin. Data were collected at ESRF BM29 using SEC-SAXS approach. In the SEC-SAXS chromatogram, frames in regions of stable Rg were selected with CHROMIXS and averaged using PRIMUS to yield a single averaged frame per protein sample. Sample was loaded on an AdvanceBio SEC 130 Å (4.6 x 50 mm) column (Agilent) via a high-performance liquid chromatography device (HPLC, Shimadzu) attached directly to the sample-inlet valve of the BM29 sample changer. Protein phosphatase that associates with over 200 regulatory proteins to form highly specific holoenzymes which dephosphorylate hundreds of biological targets. Protein phosphatase 1 (PP1) is essential for cell division, and participates in the regulation of glycogen metabolism, muscle contractility and protein synthesis. The Protein phosphatase 1 regulatory subunit 3C (PTG) acts as a glycogen-targeting subunit for PP1 and regulates its activity.

Serine/threonine-protein phosphatase PP1-alpha catalytic subunit (PP1)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   36.8 kDa
 
UniProt   P62136 (7-330)
Sequence   FASTA
 
Protein phosphatase 1 regulatory subunit 3C (PTG)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   23.0 kDa
 
UniProt   Q9UQK1 (70-264)
Sequence   FASTA