Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis.

Bon C, Cabantous S, Julien S, Guillet V, Chalut C, Rima J, Brison Y, Malaga W, Sanchez-Dafun A, Gavalda S, Quémard A, Marcoux J, Waldo GS, Guilhot C, Mourey L, BMC Biol 20(1):147 (2022) Europe PMC

SASDNL9 – Full length apo-polyketide synthase Pks13(S1533A) with Ser801 loaded by a C16-carbon chain

Polyketide synthase Pks13
MWexperimental 400 kDa
MWexpected 376 kDa
VPorod 2300 nm3
log I(s) 7.44×10-2 7.44×10-3 7.44×10-4 7.44×10-5
Polyketide synthase Pks13 small angle scattering data  s, nm-1
ln I(s)
Polyketide synthase Pks13 Guinier plot ln 7.44×10-2 Rg: 10.3 nm 0 (10.3 nm)-2 s2
(sRg)2I(s)/I(0)
Polyketide synthase Pks13 Kratky plot 1.104 0 3 sRg
Dmax: 36 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Polyketide synthase Pks13 DAMMIN model

Synchrotron SAXS data from solutions of a dimer of full length apo-polyketide synthase Pks13(S1533A) with Ser801 loaded by a C16-carbon chain in 50 mM Tris-HCl, 50 mM NaCl, pH 8 were collected on the SWING beam line at the SOLEIL storage ring (Saint-Aubin, France) using a AVIEX PCCD170170 detector at a sample-detector distance of 2.6 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed and allowed to separate the dimer of M. tuberculosis Pks13 obtained once the catalytic SER801 of the acyltransferase domain is loaded by a C16 carbon chain. The SEC parameters were as follows: A 40.00 μl sample at 3.5 mg/ml was injected at a 0.15 ml/min flow rate onto a Agilent Bio SEC-3, 300 Å column at 12°C. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Dimer of M. tuberculosis Pks13 obtained once the catalytic SER801 of the acyltransferase domain is loaded by a C16 carbon chain.

Polyketide synthase Pks13 (C16apo-Pks13(S1533A))
Mol. type   Protein
Organism   Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Olig. state   Dimer
Mon. MW   187.9 kDa
 
UniProt   I6X8D2 (1-1733)
Sequence   FASTA