Cryo-EM structures of Trypanosoma brucei gambiense ISG65 with human complement C3 and C3b and their roles in alternative pathway restriction.

Sülzen H, Began J, Dhillon A, Kereïche S, Pompach P, Votrubova J, Zahedifard F, Šubrtova A, Šafner M, Hubalek M, Thompson M, Zoltner M, Zoll S, Nat Commun 14(1):2403 (2023) Europe PMC

SASDPA9 – invariant surface glycoprotein ISG65 bound to complement C3 (C3d)

65 kDa invariant surface glycoprotein, putative
Complement C3
MWexperimental 78 kDa
MWexpected 76 kDa
VPorod 104 nm3
log I(s) 7.36×101 7.36×100 7.36×10-1 7.36×10-2
65 kDa invariant surface glycoprotein, putative Complement C3 small angle scattering data  s, nm-1
ln I(s)
65 kDa invariant surface glycoprotein, putative Complement C3 Guinier plot ln 7.36×101 Rg: 3.5 nm 0 (3.5 nm)-2 s2
(sRg)2I(s)/I(0)
65 kDa invariant surface glycoprotein, putative Complement C3 Kratky plot 1.104 0 3 sRg
p(r)
65 kDa invariant surface glycoprotein, putative Complement C3 pair distance distribution function Rg: 3.7 nm 0 Dmax: 12.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
65 kDa invariant surface glycoprotein, putative Complement C3 DAMMIF model

log I(s)
 s, nm-1
65 kDa invariant surface glycoprotein, putative Complement C3 EOM/RANCH model

Synchrotron SAXS data from solutions of invariant surface glycoprotein ISG65 bound to complement C3 (C3d) in 20 mM HEPES, 150 mM NaCl, 3% (v/v) glycerol, pH 7.5 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus3 2M detector at a sample-detector distance of 2.8 m and at a wavelength of λ = 0.099 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 50.00 μl sample at 15 mg/ml was injected at a 0.08 ml/min flow rate onto a GE Superdex 200 Increase 3.2/300 column at 20°C. 1200 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

65 kDa invariant surface glycoprotein, putative
Mol. type   Protein
Organism   Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972)
Olig. state   Monomer
Mon. MW   40.8 kDa
 
UniProt   C9ZJ67 (18-363)
Sequence   FASTA
 
Complement C3
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   35.2 kDa
 
UniProt   V9HWA9 (996-1287)
Sequence   FASTA