SAXS data based glycosylated model of alpha-1-acid glycoprotein

FNU Ashish.

SASDPG4 – Alpha-1-acid glycoprotein at 283 K

Alpha-1-acid glycoprotein 1
MWexperimental 39 kDa
MWexpected 22 kDa
VPorod 83 nm3
log I(s) 1.73×105 1.73×104 1.73×103 1.73×102
Alpha-1-acid glycoprotein 1 small angle scattering data  s, nm-1
ln I(s)
Alpha-1-acid glycoprotein 1 Guinier plot ln 1.74×105 Rg: 2.6 nm 0 (2.6 nm)-2 s2
(sRg)2I(s)/I(0)
Alpha-1-acid glycoprotein 1 Kratky plot 1.104 0 3 sRg
p(r)
Alpha-1-acid glycoprotein 1 pair distance distribution function Rg: 2.5 nm 0 Dmax: 7.5 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Alpha-1-acid glycoprotein 1 PYMOL model

log I(s)
 s, nm-1
Alpha-1-acid glycoprotein 1 PYMOL model
Alpha-1-acid glycoprotein 1 PYMOL model
Alpha-1-acid glycoprotein 1 PYMOL model
Alpha-1-acid glycoprotein 1 PYMOL model
Alpha-1-acid glycoprotein 1 OTHER [STATIC IMAGE] model

SAXS data from solutions of Alpha-1-acid glycoprotein in phosphate buffered saline, pH 7.4 were were collected using an Anton Paar SAXSpace at the CSIR Institute of Microbial Technology (IMTech; Chandigarh, India) equipped with a Mythen 1K detector at a sample-detector distance of 0.3 m and at a wavelength of λ = 0.154 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 3.50 mg/ml was measured at 10°C. One 3600 second frame was collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Note: This is a heavily glycosylated protein, so generalized results could be anamolous.

Alpha-1-acid glycoprotein 1 (AGP)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   21.6 kDa
 
UniProt   P02763 (19-183)
Sequence   FASTA