Binding by calmodulin is coupled to transient unfolding of the third FF domain of Prp40A.

Díaz Casas A, Cordoba JJ, Ferrer BJ, Balakrishnan S, Wurm JE, Pastrana-Ríos B, Chazin WJ, Protein Sci 32(4):e4606 (2023) Europe PMC

SASDPX6 – Calmodulin bound to the FF3 domain of pre-mRNA-processing factor 40 homolog A (Prp40A)

Calmodulin-1
Pre-mRNA-processing factor 40 homolog A
MWexperimental 21 kDa
MWexpected 26 kDa
VPorod 29 nm3
log I(s) 5.51×101 5.51×100 5.51×10-1 5.51×10-2
Calmodulin-1 Pre-mRNA-processing factor 40 homolog A small angle scattering data  s, nm-1
ln I(s)
Calmodulin-1 Pre-mRNA-processing factor 40 homolog A Guinier plot ln 5.51×101 Rg: 2.4 nm 0 (2.4 nm)-2 s2
(sRg)2I(s)/I(0)
Calmodulin-1 Pre-mRNA-processing factor 40 homolog A Kratky plot 1.104 0 3 sRg
p(r)
Calmodulin-1 Pre-mRNA-processing factor 40 homolog A pair distance distribution function Rg: 2.5 nm 0 Dmax: 8.7 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Calmodulin-1 Pre-mRNA-processing factor 40 homolog A MODELLER model

Synchrotron SAXS data from solutions of calmodulin bound to the FF3 domain of pre-mRNA-processing factor 40 homolog A in 50 mM HEPES, 100 mM NaCl, 2 mM CaCl2, 1 mM TCEP, pH 7.4 were collected on the 12.3.1 (SIBYLS) beam line at the Advanced Light Source (ALS: Berkeley, CA, USA) using a Pilatus3 X 2M detector at a sample-detector distance of 1.5 m and at a wavelength of λ = 0.103 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 30.00 μl sample at 10 mg/ml was injected at a 0.50 ml/min flow rate onto a Shodex LW-803 column at 25°C. 800 successive 3 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Calmodulin-1
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   16.8 kDa
 
UniProt   P0DP23 (1-149)
Sequence   FASTA
 
Pre-mRNA-processing factor 40 homolog A
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   9.5 kDa
 
UniProt   O75400 (516-592)
Sequence   FASTA