Architecture of a PKS-NRPS hybrid megaenzyme involved in the biosynthesis of the genotoxin colibactin

Bonhomme S, Contreras-Martel C, Dessen A, Macheboeuf P, Structure (2023) DOI

SASDQ87 – Solution structure of colibactin ClbK

Colibactin hybrid non-ribosomal peptide synthetase/type I polyketide synthase ClbK
MWexperimental 480 kDa
MWexpected 476 kDa
VPorod 1340 nm3
log I(s) 2.17×102 2.17×101 2.17×100 2.17×10-1
Colibactin hybrid non-ribosomal peptide synthetase/type I polyketide synthase ClbK small angle scattering data  s, nm-1
ln I(s)
Colibactin hybrid non-ribosomal peptide synthetase/type I polyketide synthase ClbK Guinier plot ln 2.17×102 Rg: 8.0 nm 0 (8.0 nm)-2 s2
(sRg)2I(s)/I(0)
Colibactin hybrid non-ribosomal peptide synthetase/type I polyketide synthase ClbK Kratky plot 1.104 0 3 sRg
p(r)
Colibactin hybrid non-ribosomal peptide synthetase/type I polyketide synthase ClbK pair distance distribution function Rg: 8.2 nm 0 Dmax: 30 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of colibactin ClbK in 50 mM HEPES pH 7.5, 200 mM NaCl, 5 mM DTT, 5 mM MgCl2, were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus3 2M detector at a sample-detector distance of 2.8 m and at a wavelength of λ = 0.0992 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 70.00 μl sample at 9 mg/ml was injected at a 0.75 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 20°C. 926 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Colibactin hybrid non-ribosomal peptide synthetase/type I polyketide synthase ClbK (ClbK)
Mol. type   Protein
Organism   Escherichia coli
Olig. state   Dimer
Mon. MW   237.8 kDa
 
UniProt   Q0P7K1 (1-2154)
Sequence   FASTA