Antiviral signalling by a cyclic nucleotide activated CRISPR protease.

Rouillon C, Schneberger N, Chi H, Blumenstock K, Da Vela S, Ackermann K, Moecking J, Peter MF, Boenigk W, Seifert R, Bode BE, Schmid-Burgk JL, Svergun D, Geyer M, White MF, Hagelueken G, Nature 614(7946):168-174 (2023) Europe PMC

SASDQQ4 – CRISPR associated Lon protease (CalpL) asymmetrically dimerizing in the presence of cyclic oligoadenylate cA4

SAVED domain-containing protein
MWI(0) 72 kDa
MWexpected 58 kDa
VPorod 116 nm3
log I(s) 1.09×103 1.09×102 1.09×101 1.09×100
SAVED domain-containing protein small angle scattering data  s, nm-1
ln I(s)
SAVED domain-containing protein Guinier plot ln 1.10×103 Rg: 3.8 nm 0 (3.8 nm)-2 s2
(sRg)2I(s)/I(0)
SAVED domain-containing protein Kratky plot 1.104 0 3 sRg
p(r)
SAVED domain-containing protein pair distance distribution function Rg: 3.7 nm 0 Dmax: 13 nm

Data validation


Fits and models


log I(s)
 s, nm-1
SAVED domain-containing protein SASREF MX model

log I(s)
 s, nm-1

Synchrotron SAXS data from solutions of CRISPR associated Lon protease (CalpL) asymmetrically dimerizing in the presence of cyclic oligoadenylate cA4 in 20 mM Tris, 50 mM NaCl, pH 8 were collected on the EMBL P12 beam line at PETRA III (DESY, Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3.1 m and at a wavelength of λ = 0.155 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 2.00 mg/ml was measured at 20°C. 30 successive 0.100 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

The data displayed in this entry shows a SAXS profile measured from a 2 mg/mL sample, as part of a concentration series 2-5 mg/mL with increasing dimer fraction. For 2 mg/mL, the protein is fitted as a mixture, with a 28% volume-fraction of the protein in a dimeric state.

SAVED domain-containing protein (CalpL)
Mol. type   Protein
Organism   Sulfurihydrogenibium sp. (strain YO3AOP1)
Olig. state   Monomer
Mon. MW   57.7 kDa
 
UniProt   B2V8L9 (2-496)
Sequence   FASTA