Structural characterization of the human DjC20/HscB cochaperone in solution

de Souza Coto A, Pereira A, Oliveira S, de Oliveira Moritz M, da Rocha A, Dores-Silva P, da Silva N, de Araújo Nogueira A, Gava L, Seraphim T, Borges J, Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics :140970 (2023) DOI

SASDR96 – Human DjC20/DnaJC20/HscB iron-sulfur cluster co-chaperone protein

Iron-sulfur cluster co-chaperone protein HscB
MWexperimental 30 kDa
MWexpected 25 kDa
VPorod 40 nm3
log I(s) 6.17×105 6.17×104 6.17×103 6.17×102
Iron-sulfur cluster co-chaperone protein HscB small angle scattering data  s, nm-1
ln I(s)
Iron-sulfur cluster co-chaperone protein HscB Guinier plot ln 6.18×105 Rg: 2.5 nm 0 (2.5 nm)-2 s2
(sRg)2I(s)/I(0)
Iron-sulfur cluster co-chaperone protein HscB Kratky plot 1.104 0 3 sRg
p(r)
Iron-sulfur cluster co-chaperone protein HscB pair distance distribution function Rg: 2.6 nm 0 Dmax: 9 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Iron-sulfur cluster co-chaperone protein HscB DAMMIF model

Synchrotron SAXS data from solutions of Human DjC20/DnaJC20/HscB iron-sulfur cluster co-chaperone protein in 25 mM Tris-HCl, 50 mM NaCl, 5 mM KCl, 2 mM β-mercaptoethanol, pH 7.5 were collected on the SAXS1 beam line at the Brazilian Synchrotron Light Laboratory (LNLS, Campinas, São Paulo, Brazil) using a Pilatus 300K detector at a sample-detector distance of 1 m and at a wavelength of λ = 0.1488 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations at 1.2 mg/mL, 1.3 mg/mL, and 2.5 mg/mL were measured at 20°C (300 second exposures). The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The data from the concentration series were processed and then merged to a single curve using PRIMUS and DATMERGE softwares. GNOM software was used to generate the pair-distance distribution function of DjC20. Ten ab initio dummy atom models were generated using DAMMIF and averaged by DAMAVER programs. The averaged model was refined using DAMMIN software.

Iron-sulfur cluster co-chaperone protein HscB
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   24.7 kDa
 
UniProt   Q8IWL3 (28-235)
Sequence   FASTA