The acidic intrinsically disordered region of the inflammatory mediator HMGB1 mediates fuzzy interactions with CXCL12.

Mantonico MV, De Leo F, Quilici G, Colley LS, De Marchis F, Crippa M, Mezzapelle R, Schulte T, Zucchelli C, Pastorello C, Carmeno C, Caprioglio F, Ricagno S, Giachin G, Ghitti M, Bianchi ME, Musco G, Nat Commun 15(1):1201 (2024) Europe PMC

SASDRJ9 – High mobility group protein B1/Stromal cell-derived factor 1 complex (HMGB1-CXCL12)

Stromal cell-derived factor 1
High mobility group protein B1 (D189E, E202D, E215D)
MWexperimental 39 kDa
MWexpected 34 kDa
VPorod 72 nm3
log I(s) 8.27×101 8.27×100 8.27×10-1 8.27×10-2
Stromal cell-derived factor 1 High mobility group protein B1 (D189E, E202D, E215D) small angle scattering data  s, nm-1
ln I(s)
Stromal cell-derived factor 1 High mobility group protein B1 (D189E, E202D, E215D) Guinier plot ln 8.28×101 Rg: 2.9 nm 0 (2.9 nm)-2 s2
(sRg)2I(s)/I(0)
Stromal cell-derived factor 1 High mobility group protein B1 (D189E, E202D, E215D) Kratky plot 1.104 0 3 sRg
p(r)
Stromal cell-derived factor 1 High mobility group protein B1 (D189E, E202D, E215D) pair distance distribution function Rg: 3.0 nm 0 Dmax: 10.5 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of the HMGB1-CXCL12 complex in 20 mM Tris, 50 mM NaCl, pH 7.5 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus3 2M detector at a sample-detector distance of 2.9 m and at a wavelength of λ = 0.099 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 3.00 mg/ml was measured at 20°C. 10 successive 0.500 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Stromal cell-derived factor 1 (CXCL12)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   9.2 kDa
 
UniProt   P48061 (22-89)
Sequence   FASTA
 
High mobility group protein B1 (D189E, E202D, E215D) (HMGB1)
Mol. type   Protein
Organism   Rattus norvegicus
Olig. state   Monomer
Mon. MW   24.7 kDa
 
UniProt   P63159 (2-215)
Sequence   FASTA