Chaotic advection mixer for capturing transient states of diverse biological macromolecular systems with time-resolved small-angle X-ray scattering

Zielinski K, Katz A, Calvey G, Pabit S, Milano S, Aplin C, San Emeterio J, Cerione R, Pollack L, IUCrJ 10(3):363-375 (2023) DOI

SASDRR4 – Diffusive GAC rRNA + Mg: Equilibrium final

50S ribosomal protein L11
MWexperimental 19 kDa
MWexpected 16 kDa
VPorod 27 nm3
log I(s) 9.65×10-5 9.65×10-6 9.65×10-7 9.65×10-8
50S ribosomal protein L11 small angle scattering data  s, nm-1
ln I(s)
50S ribosomal protein L11 Guinier plot ln 9.65×10-5 Rg: 2.2 nm 0 (2.2 nm)-2 s2
(sRg)2I(s)/I(0)
50S ribosomal protein L11 Kratky plot 1.104 0 3 sRg
Dmax: 11 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of Diffusive GAC rRNA + Mg: Equilibrium final in 10 mM sodium cacodylate, 100 mM KCl, pH 6.5 were collected on the G1 beam line at the Cornell High Energy Synchrotron Source (CHESS) storage ring (Ithaca, NY, USA) using a Pilatus 100K detector at a wavelength of λ = 0.10972 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 1.2 and 1.5 mg/ml were measured at 20°C. 20 successive 5 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

GAC rRNA (75-100 micromolar) and MgCl2 (5 mM) were mixed together and left to equilibrate for several minutes before the measurement. Molecular weight determined by Vc. Data published in Welty, R., Pabit, S. A., Katz, A. M., Calvey, G. D., Pollack, L. & Hall, K. B. (2018). RNA 24, 1828–1838. https://doi.org/10.1261/rna.068361.118

50S ribosomal protein L11 (L11 protein)
Mol. type   Protein
Organism   Thermus thermophilus
Olig. state   Monomer
Mon. MW   15.5 kDa
 
UniProt   P36238 (1-147)
Sequence   FASTA