Regulation of the Escherichia coli paaR2-paaA2-ParD2 toxin-antitoxin system

Marusa Prolic Kalinsek.

SASDRV6 – Transcription regulator PaaR2

Phage repressor protein CI (C120S)
MWexperimental 126 kDa
MWexpected 122 kDa
VPorod 428 nm3
log I(s) 6.89×10-2 6.89×10-3 6.89×10-4 6.89×10-5
Phage repressor protein CI (C120S) small angle scattering data  s, nm-1
ln I(s)
Phage repressor protein CI (C120S) Guinier plot ln 6.90×10-2 Rg: 5.0 nm 0 (5.0 nm)-2 s2
(sRg)2I(s)/I(0)
Phage repressor protein CI (C120S) Kratky plot 1.104 0 3 sRg
p(r)
Phage repressor protein CI (C120S) pair distance distribution function Rg: 5.1 nm 0 Dmax: 16.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Phage repressor protein CI (C120S) OTHER model
Phage repressor protein CI (C120S) OTHER model
Phage repressor protein CI (C120S) OTHER model
Phage repressor protein CI (C120S) OTHER model
Phage repressor protein CI (C120S) OTHER model
Phage repressor protein CI (C120S) OTHER model
Phage repressor protein CI (C120S) OTHER model
Phage repressor protein CI (C120S) OTHER model
Phage repressor protein CI (C120S) OTHER model
Phage repressor protein CI (C120S) OTHER model

Synchrotron SAXS data from solutions of transcription regulator PaaR2 in 20 mM Tris-HCl, 200 mM NaCl, pH 8 were collected on the SWING beam line at SOLEIL (Saint-Aubin, France) using a Eiger 4M detector at a sample-detector distance of 2.2 m and at a wavelength of λ = 0.103 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 45.00 μl sample at 10 mg/ml was injected at a 0.30 ml/min flow rate onto a Shodex KW402.5-4F column at 15°C. 630 successive 0.990 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Phage repressor protein CI (C120S) (PaaR2)
Mol. type   Protein
Organism   Escherichia coli O157:H7
Olig. state   Octamer
Mon. MW   15.3 kDa
 
UniProt   Q8XAD6 (1-123)
Sequence   FASTA