Fuzzy recognition by the prokaryotic transcription factor HigA2 from Vibrio cholerae.

Hadži S, Živič Z, Kovačič M, Zavrtanik U, Haeserts S, Charlier D, Plavec J, Volkov AN, Lah J, Loris R, Nat Commun 15(1):3105 (2024) Europe PMC

SASDS86 – Antitoxin HigA-2 in complex with a DNA operator sequence

Antitoxin HigA-2
DNA operator
MWexperimental 33 kDa
MWexpected 43 kDa
VPorod 57 nm3
log I(s) 4.73×10-2 4.73×10-3 4.73×10-4 4.73×10-5
Antitoxin HigA-2 DNA operator small angle scattering data  s, nm-1
ln I(s)
Antitoxin HigA-2 DNA operator Guinier plot ln 4.74×10-2 Rg: 2.7 nm 0 (2.7 nm)-2 s2
(sRg)2I(s)/I(0)
Antitoxin HigA-2 DNA operator Kratky plot 1.104 0 3 sRg
p(r)
Antitoxin HigA-2 DNA operator pair distance distribution function Rg: 2.8 nm 0 Dmax: 9.6 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of antitoxin HigA-2 in complex with a DNA operator sequence in 20 mM Tris pH 8, 200 mM NaCl were collected on the SWING beam line at SOLEIL (Saint-Aubin, France) using a AVIEX PCCD170170 detector at a sample-detector distance of 2.0 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 40.00 μl sample at 3.3 mg/ml was injected at a 0.20 ml/min flow rate onto a Shodex KW402.5-4F column at 15°C. 480 successive 0.990 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Antitoxin HigA-2
Mol. type   Protein
Organism   Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Olig. state   Dimer
Mon. MW   11.6 kDa
 
UniProt   Q9KMA5 (2-104)
Sequence   FASTA
 
DNA operator
Mol. type   DNA
Olig. state   Dimer
Mon. MW   10.1 kDa
Sequence   FASTA