Mixed sequence single stranded RNA in 100mM NaCl

Tong Wang.

SASDSN5 – A and C rich mixed sequence single stranded RNA in 100mM NaCl

Mixed sequence single stranded RNA, rich in A and C bases
MWexperimental 13 kDa
MWexpected 10 kDa
VPorod 15 nm3
log I(s) 5.92×10-2 5.92×10-3 5.92×10-4 5.92×10-5
Mixed sequence single stranded RNA, rich in A and C bases small angle scattering data  s, nm-1
ln I(s)
Mixed sequence single stranded RNA, rich in A and C bases Guinier plot ln 5.92×10-2 Rg: 2.2 nm 0 (2.2 nm)-2 s2
(sRg)2I(s)/I(0)
Mixed sequence single stranded RNA, rich in A and C bases Kratky plot 1.104 0 3 sRg
p(r)
Mixed sequence single stranded RNA, rich in A and C bases pair distance distribution function Rg: 2.4 nm 0 Dmax: 7.6 nm

Data validation


There are no models related to this curve.

SAXS data from solutions of A and C rich mixed sequence single stranded RNA in 100 mM NaCl, 10 mM MOPS, 20 µM EDTA, pH 7 were collected using a Xenocs BioXolver L with GeniX3D instrument (University of Copenhagen, Department of Drug Design and Pharmacology) equipped with a Pilatus3 R 300K detector at a sample-detector distance of 0.7 m and at a wavelength of λ = 0.154189 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 1 and 2.9 mg/ml were measured at 25°C. 10 successive 120 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentrations were extrapolated to infinite dilution and merged with the higher concentration data to yield the final composite scattering curve.

Mixed sequence single stranded RNA, rich in A and C bases
Mol. type   RNA
Organism   synthetic construct
Olig. state   Monomer
Mon. MW   9.7 kDa
Sequence   FASTA