Structural insights of an LCP protein-LytR-from Streptococcus dysgalactiae subs. dysgalactiae through biophysical and in silico methods.

Paquete-Ferreira J, Freire F, Fernandes HS, Muthukumaran J, Ramos J, Bryton J, Panjkovich A, Svergun D, Santos MFA, Correia MAS, Fernandes AR, Romão MJ, Sousa SF, Santos-Silva T, Front Chem 12:1379914 (2024) Europe PMC

SASDTG2 – LCP domain of LytR from Streptococcus dysgalactiae in the presence of geranylgeranyl diphosphate (150 mM NaCl)

Biofilm regulatory protein
MWexperimental 40 kDa
MWexpected 34 kDa
VPorod 83 nm3
log I(s) 7.40×100 7.40×10-1 7.40×10-2 7.40×10-3
Biofilm regulatory protein small angle scattering data  s, nm-1
ln I(s)
Biofilm regulatory protein Guinier plot ln 7.40×100 Rg: 2.5 nm 0 (2.5 nm)-2 s2
(sRg)2I(s)/I(0)
Biofilm regulatory protein Kratky plot 1.104 0 3 sRg
p(r)
Biofilm regulatory protein pair distance distribution function Rg: 2.4 nm 0 Dmax: 8 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of the LCP domain of LytR with geranylgeranyl diphosphate in 50 mM HEPES, 150 mM NaCl, 5 mM MgCl2, pH 8 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus 3 2M detector at a wavelength of λ = 0.1 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). Solute concentrations ranging between 2.2 and 0.1 mg/ml were measured at 20°C. 10 successive frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted. The low angle data collected at lower concentration were merged with the highest concentration high angle data to yield the final composite scattering curve.

Geranylgeranyl diphosphate: https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:CHEBI:15831

Biofilm regulatory protein (LytR/BrpA)
Mol. type   Protein
Organism   Streptococcus dysgalactiae subsp. dysgalactiae
Olig. state   Monomer
Mon. MW   33.6 kDa
 
UniProt   A0A0A7LTX5 (48-342)
Sequence   FASTA