The Chlamydia pneumoniae effector SemD exploits its host’s endocytic machinery by structural and functional mimicry

Kocher F, Applegate V, Reiners J, Port A, Spona D, Hänsch S, Mirzaiebadizi A, Ahmadian M, Smits S, Hegemann J, Mölleken K, Nature Communications 15(1) (2024) DOI

SASDTS5 – Sorting nexin-9, N-terminus - SNX9-SH3 (apo form)

Sorting nexin-9
MWexperimental 19 kDa
MWexpected 19 kDa
VPorod 42 nm3
log I(s) 4.88×10-3 4.88×10-4 4.88×10-5 4.88×10-6
Sorting nexin-9 small angle scattering data  s, nm-1
ln I(s)
Sorting nexin-9 Guinier plot ln 4.89×10-3 Rg: 2.2 nm 0 (2.2 nm)-2 s2
(sRg)2I(s)/I(0)
Sorting nexin-9 Kratky plot 1.104 0 3 sRg
p(r)
Sorting nexin-9 pair distance distribution function Rg: 2.2 nm 0 Dmax: 7.1 nm

Data validation


There are no models related to this curve.

Synchrotron SAXS data from solutions of SNX9-SH3 in 137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, 1.8 mM KH2PO4, 3% glycerol, pH 8.5 were collected on the EMBL P12 beam line at PETRA III (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAS was employed. The SEC parameters were as follows: A 100.00 μl sample at 3.3 mg/ml was injected at a 0.60 ml/min flow rate onto a GE Superdex 200 Increase 10/300 column at 20°C. 2400 successive 0.995 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Sorting nexin-9 (SNX9-SH3)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   18.8 kDa
 
UniProt   Q9Y5X1 (1-160)
Sequence   FASTA