Cryo-EM analysis of complement C3 reveals a reversible major opening of the macroglobulin ring.

Gadeberg TAF, Jørgensen MH, Olesen HG, Lorentzen J, Harwood SL, Almeida AV, Fruergaard MU, Jensen RK, Kanis P, Pedersen H, Tranchant E, Petersen SV, Thøgersen IB, Kragelund BB, Lyons JA, Enghild JJ, Andersen GR, Nat Struct Mol Biol (2025) Europe PMC

SASDTU8 – Complement C3* at 1.25 mg/mL (pH 6.0, 200 mM NaCl)

Complement C3 (Δ668-671)
MWexperimental 243 kDa
MWexpected 187 kDa
VPorod 357 nm3
log I(s) 9.65×10-2 9.65×10-3 9.65×10-4 9.65×10-5
Complement C3 (Δ668-671) small angle scattering data  s, nm-1
ln I(s)
Complement C3 (Δ668-671) Guinier plot ln 9.65×10-2 Rg: 5.4 nm 0 (5.4 nm)-2 s2
(sRg)2I(s)/I(0)
Complement C3 (Δ668-671) Kratky plot 1.104 0 3 sRg
p(r)
Complement C3 (Δ668-671) pair distance distribution function Rg: 5.6 nm 0 Dmax: 21.8 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Complement C3 (Δ668-671) CORAL model

Synchrotron SAXS data from solutions of complement C3* in 20 mM MES pH 6.0, 200 mM NaCl, pH 6 were collected on the EMBL P12 beam line at PETRA III (DESY; Hamburg, Germany) using a Pilatus 6M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.124 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 1.25 mg/ml was measured at 8°C. 40 successive 0.095 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

CAUTION! The low-angle SAXS intensities encompassing the entire Guinier region - and beyond to higher angle - (0.03 < s < 0.34 nm-1) have been removed when assessing the model fit to the data. Consequently, the model fit and particle sizing cannot be validated (e.g., Rg(model) = 4.8 nm; Rg(experiment) = 5.5 nm; Dmax model = 14.6 nm; Dmax(experiment) = 21.8 nm, etc).

Complement C3 (Δ668-671) (C3)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   186.5 kDa
 
UniProt   P01024 (1-1663)
Sequence   FASTA