The SCR-17 and SCR-18 glycans in human complement Factor H enhance its regulatory function.

Gao X, Iqbal H, Yu DQ, Gor J, Coker AR, Perkins SJ, J Biol Chem :107624 (2024) Europe PMC

SASDUT2 – Recombinant short complement regulator SCR-17/18H (produced in Pichia pastoris with PNGase F treatment)

Complement factor H
MWI(0) 21 kDa
MWexpected 17 kDa
VPorod 46 nm3
log I(s) 1.32×10-1 1.32×10-2 1.32×10-3 1.32×10-4
Complement factor H small angle scattering data  s, nm-1
ln I(s)
Complement factor H Guinier plot ln 1.33×10-1 Rg: 3.1 nm 0 (3.1 nm)-2 s2
(sRg)2I(s)/I(0)
Complement factor H Kratky plot 1.104 0 3 sRg
p(r)
Complement factor H pair distance distribution function Rg: 3.2 nm 0 Dmax: 10.5 nm

Data validation


Fits and models


log I(s)
 s, nm-1
Complement factor H PYMOL model

Synchrotron SAXS data from solutions of recombinant short complement regulator SCR-17/18H in 10 mM HEPES, 137 mM NaCl, pH 7.4 were collected on the B21 beam line at the Diamond Light Source (Didcot, UK) using a Eiger 4M detector at a sample-detector distance of 4 m and at a wavelength of λ = 0.12 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 1.50 mg/ml was measured at 20°C. During batch mode operations, an automatic sampler (96-well plate) transferred 35 µl of the sample from the plate to a temperature-controlled quartz capillary cell with a 1.5 mm diameter. Data were recorded in 30-frame sets, each frame having an exposure time of 1 second, and each set was acquired in duplicate to confirm reproducibility. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

Batch mode data were collected across several sessions between 2019 and 2021 using the SCR-17/18H with PNGase F treatment (recombinant glycosidase) to remove N-linked glycosylation. Protein produced in Pichia pastoris (Komagataella pastoris). A non-standard fit file is displayed (comparison between interpolated experimental data and theoretical fitting data).

Complement factor H (SCR-17/18)
Mol. type   Protein
Organism   Homo sapiens
Olig. state   Monomer
Mon. MW   16.6 kDa
 
UniProt   P08603 (988-1107)
Sequence   FASTA